| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_4438 |
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| Symbol | prpD |
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| ID | 4094712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia AU 1054 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008061 |
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| Strand | + |
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| Start bp | 1671007 |
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| End bp | 1672458 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638017725 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_624293 |
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| Protein GI | 107026782 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.394122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCC CGGTCTCCAA CGTCCGCCCC GCGCCGGATT CGGTACTCGT CGACATCGTC
GACTACGTGC TGAACACCGG CATCGACGGC GCGCTCGCGC TGGAGACGGC GCGTCATTGC
CTGATCGACA CGCTCGGATG CGGACTCGAG GCGCTGTCCT ACCCTGCCTG CACCAAGCTG
CTCGGCCCCG TCGTGCCCGG CACGATCGTG CCGAACGGCG CGAAGGTGCC GGGCACGTCC
TTCCAGCTGG ATCCCGTCCA GGCCGCGTTC GACATCGGCG CGATGATCCG CTGGCTGGAC
TTCAACGACA CCTGGCTCGC CGCCGAATGG GGTCATCCGT CCGACAACCT CGGCGGGATC
CTGGCGACGG CCGACTGGCT CTCCCGCACG GCCCGCGCGG CCGGCCGGAA GCCGCTCGCG
ATGCGCGACG TGCTAGTCGC GATGATCCAG GCCCACGAGA TCCAGGGCTG CCTCGCGCTC
GAGAACTCGT TCAACGCGGT CGGGCTCGAC CACGTGCTGC TCGTGAAGGT CGCATCGACG
GCCGTCGTCG GGCGCCTGCT CGGGCTCACG CGCGACGAGC TGATCAACGC GGTCTCCAAC
GCATTCGTCG ACGGCCACGC GCTGCGTACG TACCGCCATG CGCCGAACAC CGGTTCGCGC
AAATCGTGGG CGGCCGGCGA TGCCACGTCC CGCGCGGTGC GCCTCGCGCT GATCGCGAAA
ACGGGTGAAA TGGGTTATCC GTCGGCGCTC ACCGCCAAAA CCTGGGGCTT CTACGACGTG
CTGTTCGACG GCAAGCCGTT CCGCTTCCAG CGCCCGTACG GCACGTACGT GATGGAAAAC
GTGCTGTTCA AGATCGCATT CCCCGCCGAA TTTCATGCGC AGACGGCCGC CGAGGCCGCG
CTGCAGCTGC ACGCGCAGCT CGCCGCGGCG GGCCGCACGA CCGACGACAT CAGCCGGATC
ACGATCCGCA CGCACGCGGC CGCGATCCGC ATCATCGACA AGCAGGGCCC GCTCGCCAAT
CCGGCCGACC GCGACCACTG CATCCAGTAC ATGGTCGCCG TGCCGCTGCT GTTCGGCCGG
CTGACCGCGG CCGACTATGA AGACGCGGCC GCGGCGGACC CGCGCATCGA CGCGCTGCGC
GCGAAAACCG TGTGCGTCGA GGATCCGCAG TTCACAAAGG ATTACCACGA TCCGGACAAG
CGATCGATCG CGAATGCGCT GACGATCGCG TTCACGGACG GATCGAAGCT TGCCGAAGTG
GCGGTCGAGT ATCCGCTCGG CCATCGGCGG CGGCGCGCCG AAGGCGTTCC GCTCCTGGTC
GAGAAGTTCA GGACCAACCT CGCCCGTCGC TTTCCGGCCA AGCAGCAACA AGCGATTCTC
GACGTGTCGC TGGACCAGGC AAAGCTCGAA GCGATGCCGG TCGATGAGTA CGTCGACTTG
TACGTGATAT AG
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| Protein sequence | MSAPVSNVRP APDSVLVDIV DYVLNTGIDG ALALETARHC LIDTLGCGLE ALSYPACTKL
LGPVVPGTIV PNGAKVPGTS FQLDPVQAAF DIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRT ARAAGRKPLA MRDVLVAMIQ AHEIQGCLAL ENSFNAVGLD HVLLVKVAST
AVVGRLLGLT RDELINAVSN AFVDGHALRT YRHAPNTGSR KSWAAGDATS RAVRLALIAK
TGEMGYPSAL TAKTWGFYDV LFDGKPFRFQ RPYGTYVMEN VLFKIAFPAE FHAQTAAEAA
LQLHAQLAAA GRTTDDISRI TIRTHAAAIR IIDKQGPLAN PADRDHCIQY MVAVPLLFGR
LTAADYEDAA AADPRIDALR AKTVCVEDPQ FTKDYHDPDK RSIANALTIA FTDGSKLAEV
AVEYPLGHRR RRAEGVPLLV EKFRTNLARR FPAKQQQAIL DVSLDQAKLE AMPVDEYVDL
YVI
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