| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_4074 |
|---|
| Symbol | |
|---|
| ID | 4095815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | + |
|---|
| Start bp | 1248928 |
|---|
| End bp | 1250106 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638017368 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_623936 |
|---|
| Protein GI | 107026425 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.119469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCTGC CGGCGCGCGC GTCGGTGTCG CGGCGCGGAC GGATCGTCCT GATCGTGATC
GGCGTGCTGC TCGCGGCGGG CGCCGCGCGC ACCATCGTCG TCAACGTGCT GAACCAGCAT
CGCCTCGACG CGGTCGCCGC GCAGAACACG CGCCAGTACG TGAGCGTCGT GCATCCGGTC
GACGCGGCCA CCGGCGGCAA GCTGACGCTG CCCGGCACGC TGCGCGGCTT CGTCGAGGCG
CCGATCTATG CGCGCGCCAG TGGCTACGTG CTGCGCTGGC AGGCCGATAT CGGCGCGCAC
GTGAAGCAGG GACAAACGCT CGCCGAACTC GACACGCCGG AGCTGAACCA GGAACTGGCG
CAGGCCACCG CGCAGCGCCA GCAGGCGCAA GCCGCGCTCG CGCTCGCGAA GACGTCGTTC
GACCGCGCGC AGCAGTTGCG CCAGCGCGAT GCCGTGTCGC AGCAGGAACT CGACGACCGG
CAAGGCGCGT TCAGCCAGGG CAGCGCGAAC CTCGCGGCGG CCGATGCGAA CATGCGCCGC
CTCACCGAGC TGAAGGGCTT CCAGCGGATC GTCGCGCCGA TCGACGGGAT CGTCACGCAG
CGCAACGTCG ACGTCGGCGA TCTCGTCAAT TCCGGCAACG CGGGCCGCTC GCTGTTCACG
GTCGTGCAGG CCGACCGGCT GCGCCTGTAC GTGCAGGTGC CGCAGGCGTA TGCGCAGCAG
GTGAAGGTCG GCCAGCACGT GAGCGTCGCG CAGGCCGAGC TGCCGGGGCG CACTTTCGAC
GGGACGATCA CGCGCACGTC GCAGGCGATC GACGTCGCGA CGCGTTCGCT GCAGATTGAG
ATCACGCTGC CGAATCCGGA CGGGCGGCTG CTGCCCGGCG CGTACGTGCA GGCGACGCTG
CCGATGACGC CGGTCGGCCG CCTGCAGGTG CCGGCCAATA CGCTGCTGTT CCGCGCCGAA
GGCCCGACGG TCGCCGCCGT CGATGCGAAC GGCCAGGTCC GGCTGAAACA GGTGACGGTC
GTGCGCACGA TCGGCCAGAC GCTCGAAGTC GACGGGCTGA TCACGCCGAA CGACCGCCTC
GTCGCGAACC CGAGCGACGC GCTCGCGACC GGCGACCGGG TCGTCGTGCA GGCGCCGGCG
GCACAGCCCG CCTCGGCGGT CGCGGGGGCG AAGTCGTGA
|
|---|
| Protein sequence | MHLPARASVS RRGRIVLIVI GVLLAAGAAR TIVVNVLNQH RLDAVAAQNT RQYVSVVHPV
DAATGGKLTL PGTLRGFVEA PIYARASGYV LRWQADIGAH VKQGQTLAEL DTPELNQELA
QATAQRQQAQ AALALAKTSF DRAQQLRQRD AVSQQELDDR QGAFSQGSAN LAAADANMRR
LTELKGFQRI VAPIDGIVTQ RNVDVGDLVN SGNAGRSLFT VVQADRLRLY VQVPQAYAQQ
VKVGQHVSVA QAELPGRTFD GTITRTSQAI DVATRSLQIE ITLPNPDGRL LPGAYVQATL
PMTPVGRLQV PANTLLFRAE GPTVAAVDAN GQVRLKQVTV VRTIGQTLEV DGLITPNDRL
VANPSDALAT GDRVVVQAPA AQPASAVAGA KS
|
|---|
| |