| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_3973 |
|---|
| Symbol | |
|---|
| ID | 4094489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | + |
|---|
| Start bp | 1142191 |
|---|
| End bp | 1143498 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638017267 |
|---|
| Product | shikimate transporter |
|---|
| Protein accession | YP_623835 |
|---|
| Protein GI | 107026324 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.483442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCA CCTTCGACAC CCTCGACGCC GCCGCCGGCG CCCGTGCGCG CAGCCAGGCC
CGCAAGGCCG CGATCGGCAG CTTCGTCGGC GCCGTCGTCG ACTGGTACGA CTTCCTGCTG
TACGGGATCG TCGCCGCGCT GGTGTTCAAT TCCGAGTTTT TCCCGAAAGT CAGTCCGACG
ATGGGCACGC TCGCGGCGTT CGCCACCTTC GGCGTCGGCT TCCTGTTCCG GCCGCTCGGC
GGCATCGTGT TCGGTCACTA CGGCGACCGG CTCGGCCGCA AGCGGATGCT CGTGCTGACC
GTGATGCTGA TGGGGCTGTC GACGGTCGCG ATCGGCCTAC TGCCGGCGTT CTCGACGATC
GGCTGGTGGG CGCCCGTGCT GCTGGTGCTG ATGCGCGCGA TCCAGGGTTT CGCGGTCGGC
GGCGAATGGG GCGGCGCGGC GCTGATGGCG GTCGAGAGCG CGCCGAAGCA GAAGAAGGCG
TTCTACAGCA GCGGCGTGCA GGTCGGCTAC GGCGTCGGGC TCGTGCTGGC CACCGGCATC
GTCTCGATCC TCAGTCATAC GCTCGGCGAG GCCGCGTTCA AGTCGTGGGG CTGGCGCCTG
CCGTTCGTGT TCAGCATCGT GCTGGTGCTG ATCGGGCTGT GGGTGCGCAA GAACATGGAC
GAATCGCAGG AGTTCGTCGA GAAGGTCGAG CACGGCAACC GCAAGCTCCG CCTGCCGGTG
CTGGAAGCGT TGACGCGCCA CCCGAAGGCG TTCCTGCTGA TCGTTGCACT GCGGCTTGCC
GAGCTGTTCA CGATGTACAT CGTCACCGCG TTCGCGCTCA GCTATTCGAC GACGAACCTC
GGCATGTCGC GCGACCTGTT CCTGAACATC GGCCTGCTGG TGGGCGCGGT GAGCTGCGTG
ACGATCCCCT GCTTCGCGTG GCTGGCCGAT CGCTACGGCC TGCGCCGTAT CTACCTGATC
GGCGCGCTGA TCGGTCTTGC GTCGGCGGTG CCGTTCTTCG TCGCGCTGGA AGCGCGGTCG
ATCGCGTGGA TCGTGATCTT CTCGATCCTG TTGGCGAACG CCGCGCACGA CATGGTCGTG
AGCGTCCAGC AGCCGTTGTT CACCGAGCTG TTCGGCGCCG AATACCGCTA CAGCGGCGCG
GGTGTCGGCT ACCAGTTCGC GAGCGTCGTC GGCGGCGGGT TCACGCCGTT CATCGCGGTC
GGCCTCGTCA GCGTGGCCGG CGGTTCGTGG CACCTCGTCG CCGGCTACCT GGCGGTCGGT
TGCCTGATCT CGCTGGTGGT CGCCGCGCGG ATGCGGGCGG CGCGATGA
|
|---|
| Protein sequence | MTPTFDTLDA AAGARARSQA RKAAIGSFVG AVVDWYDFLL YGIVAALVFN SEFFPKVSPT
MGTLAAFATF GVGFLFRPLG GIVFGHYGDR LGRKRMLVLT VMLMGLSTVA IGLLPAFSTI
GWWAPVLLVL MRAIQGFAVG GEWGGAALMA VESAPKQKKA FYSSGVQVGY GVGLVLATGI
VSILSHTLGE AAFKSWGWRL PFVFSIVLVL IGLWVRKNMD ESQEFVEKVE HGNRKLRLPV
LEALTRHPKA FLLIVALRLA ELFTMYIVTA FALSYSTTNL GMSRDLFLNI GLLVGAVSCV
TIPCFAWLAD RYGLRRIYLI GALIGLASAV PFFVALEARS IAWIVIFSIL LANAAHDMVV
SVQQPLFTEL FGAEYRYSGA GVGYQFASVV GGGFTPFIAV GLVSVAGGSW HLVAGYLAVG
CLISLVVAAR MRAAR
|
|---|
| |