Gene Bcen_3833 details

Gene Information

• Locus tag: Bcen_3833
• ID: 4096290
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia AU 1054
• Kingdom: Bacteria
• Replicon accession: NC_008061
• Strand: +
• Start bp: 986191
• End bp: 988077
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638017130
• Product: TRAP dicarboxylate transporter- DctM subunit
• Protein accession: YP_623698
• Protein GI: 107026187
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.187747
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACATGC ACTCCGTGTC GGGCGCCGCG CCGGCTCCCG CTGCCGGCCA GCCGGCGCAT 
CGCGTCGCCC GCGTGCTGGA TGCGGCGCTG CGCCGGCTCG AGTATCTGTC GGCCGTGGTC 
CTCGCCGTCG ACGTGCTGGT CGTGTTCGTG TCGGTCGTGT TCCGCTATTT CCTGCACGAC 
CCGGTCGACT GGGCCGAGGA AGTGGCCAGC GCGCTGATGA TCGTGCTGGT GTTCTTCGGC 
GCGGCGACGG TGCTGGGGCG CAGCCAGCAT GTCGGCATCG ACGTGTTTCG CGGCCGGCTG 
CCGGCACGCT GGCAGGGCGC GCTGATCCAG GTCGGCCACT GGATCGTGGC GGCCGTCGCG 
CTGAACCTGC TGGTGTCGTC GTGCCAGTTG CTCGCGGATT CGTGCGACCA GCTGACGACG 
GGCGGCCTGC CGGGCTGGAT CAACGGGTAT CCGATGATGT TCGGCGCGCT GTTTATGACC 
GTATTCGCGC TCGCCAATGC GCTGAACGCG CCGCGCCGCC GGGTGATCGG CACGTTCGTG 
TGCTGTGCGG CGCTCGCGGG CGCCGTGTAC GGCTGGAACG CGCTGTGGCC CGCGCAGGCG 
GTCGCGCCGG GCACGCTGCT GGTCGCGGGC TTCGTCGGCG GGCTGGTGCT CGGCGTGCCG 
ATCGGGTTCG TGCTGGCGTT TTCGGCGCTG CTGTATTTCC TCGCCGATCC GACGCTGCCG 
CTGCTCGTCT ACTCGCAACA GGTGATGGCC GGGGCCGACC ACTTCGTGCT GCTCGCGGTG 
CCGTTCTTCG TGCTGGCGGG GCTGCTGATG GAGACCAACG GGATGTCCGC GCGGCTCGTC 
GAGCTGCTGC TGCGGATCTT CGGGCGCGTG CGGGGCGGGC TCGGCCTGAT CGTGATCTTC 
GCGACGGCGT GCTTTTCCGG CGTATCGGGC TCGAAACTGG CCGATATCGC GGCGGTGGGC 
GGCGTCGTGA TGCCGGCGGT GCGCCGCGCG CGGCAGGACC CGAACGAAAC CGCCGCGCTG 
CTCGCGTGCA GCGCGGTGAT GGCCGAGACG ATTCCGCCGT GCGTGAACAT GATCATCATG 
GGCTTCGTCG CGAACATCTC GATCGCCGGG CTGTTCGTCG CGGGGATCGT CCCGGCGGCC 
GTGCTGGCCG CGTCGCTCGC GGTCGTGACG GTGATCACCG GGCGCAAGAT CGACGTGGCC 
GAGGTGTTCG GCGAGCGTCG CGCATGGCTG CCGCTGGCGG GCGGCGCGCT CGTCGCGCTG 
GTCATGGTCG CGATGATCGG CAAGGGCGTG ACGTCGGGGA TCGCGACGTC GACCGAAGTG 
TCGGCGTTCG CGGTGGTCTA CGCGCTCGTC GTGGGCTGGA TCGCGTTTCG CGAACTGACG 
TGGCGCTCGG TCGGCCGCGT GTTCGTGCGC GCCGCATCGA TGGCGAGCGG TATCCTGTTC 
ATCGTCGCGG CGGCGTCGAG CGTGTCGTTC GCGCTGTCGA TCGAGCAGAT TCCGGCCCTC 
GTCTCGGGCA CAATGACGGC GTTTGCCCAT CAATACGGCG CGACGATGTT CCTGCTGCTG 
GCGGCGCTGC TGATGATCGT GTTCGGCGCC GTGCTCGAAG GCGCGCCCGC GCTGATCATC 
TTCGGGCCGC TGCTCGCGCC GATCGCACTG CAGCTCGGTA TCAATCCGCT GCATTTCGGC 
ACGGTTGTGG TGGTGGCGAT GGGGTTCGGG TTGTTCGCGC CGCCGGTCGG GCTCGGGCTG 
TTCACGACGT GCGCGATCAC GGGCACCGAG GTCGGGCGCG TAGCTCGGCC GATGGTGAAA 
TACCTGCTGG TGCTGTTCGC TGCCCTCGTG GCGCTGATCT TCGCACCGGC GTTTTCGTTG 
TGGCTGCCGG CCCATTTCGG CCTGTAG 

 

Protein sequence

MDMHSVSGAA PAPAAGQPAH RVARVLDAAL RRLEYLSAVV LAVDVLVVFV SVVFRYFLHD 
PVDWAEEVAS ALMIVLVFFG AATVLGRSQH VGIDVFRGRL PARWQGALIQ VGHWIVAAVA 
LNLLVSSCQL LADSCDQLTT GGLPGWINGY PMMFGALFMT VFALANALNA PRRRVIGTFV 
CCAALAGAVY GWNALWPAQA VAPGTLLVAG FVGGLVLGVP IGFVLAFSAL LYFLADPTLP 
LLVYSQQVMA GADHFVLLAV PFFVLAGLLM ETNGMSARLV ELLLRIFGRV RGGLGLIVIF 
ATACFSGVSG SKLADIAAVG GVVMPAVRRA RQDPNETAAL LACSAVMAET IPPCVNMIIM 
GFVANISIAG LFVAGIVPAA VLAASLAVVT VITGRKIDVA EVFGERRAWL PLAGGALVAL 
VMVAMIGKGV TSGIATSTEV SAFAVVYALV VGWIAFRELT WRSVGRVFVR AASMASGILF 
IVAAASSVSF ALSIEQIPAL VSGTMTAFAH QYGATMFLLL AALLMIVFGA VLEGAPALII 
FGPLLAPIAL QLGINPLHFG TVVVVAMGFG LFAPPVGLGL FTTCAITGTE VGRVARPMVK 
YLLVLFAALV ALIFAPAFSL WLPAHFGL