Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_3512 |
Symbol | |
ID | 4096319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008061 |
Strand | + |
Start bp | 623407 |
End bp | 625452 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638016811 |
Product | Type III secretion system outer membrane pore YscC/HrcC |
Protein accession | YP_623379 |
Protein GI | 107025868 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.174783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCGAC GCGTCGCCTC GATCCGGTTT CAACCGCGCA GCCTGCAACG GGCCGCGCTT GCCGTGTGCG CGACCGCGCT GCTCACGGCG TCGCTGTGCA TGGCGCCCGC GCAGCATGCG CGCGCCGCGG ACCTGCGCTG GCGCAACAAG CCGTTCACGA TCGTCGCGAA CGGCAAGAAG ATCGGCGACT TCATCCGCGA GCTCGCGTCG TCGCAGGGCG TGACGGCGGT GGTCGACCCG AAGGTCGACG GCGTGATCAG CGGCCGCTTC TCCGGCACGC CGCAGCAGAC GCTCGACACG ATCTGCTCGA CCTACGGGCT CACGTGGTAC TACGACGGCT CGTTCCTGTA CGTCGATCCG GCCGACCAGT CGCAGACGCA GATGATCCCG ATCCCGCCGA ATGCGTCCGG CGAAATCGGC CGCGCGCTGC AGGCGATGCA GATTCCGGAC AAGCGCTACA CGCTGGTGAT CAACGACCGC GCCAATAGCG TGTACGTGGC CGGCCCGCGC CGCTATGTCG AGCTCGTGCG GCAGGCGGTC GGCTCGGTCG GCGATCCGGC GGCGAACGGC GCGCATGCGG ACATCCGCGC GTTCCGGCTG AAATACGGCT GGGCGTCGGA CTTCACGATC AACCGCTCGG GCAAGGAAGT GACGGTGCCG GGCGTCGCGA CGATCCTGCG CCGGCTGTTC GGCAAGGGCG GCGGCACGAC CGCGGCGCCA TCGAGCACGC CGCTCGGGCA GGCCGCGCGC CAGGTGAAGC TCGGCTCGGG GCTGACGATC GCGGTGCCGC GGCTCGACTT TCCCGACATC TCGGGCGGCC CGCGGCAGGG CGGCTATGGC GGGGCGGACA GCGGCATGGG CGGCGGCTTC TCGCCGTTCG CGAACAACGG CGGCGGCGAC ACGCTGCCGC AGATCGTCGC CGATCCGGCG ATCAACGCGG TGATCGTGCG CGACCTGCCG GAGAACATGT ACCGCTACCA GTCGCTGATC AACCAGCTCG ACGAGCGGCC GCGCATCGTC GAGATCAACG TGACGATCAT CGACATCAAC GAGGATTCGC TCGACAGTCT CGGGATCGAC TGGCGCCTGC ACACGACGCA CGGCGACGTG CAGATCGGCA ACGGCCAGAA CGCGCTGAAC GGCAACACGC AGTACAACGG CGTCGGCAAC CCGCCGCTGA CGTTCGGCAT CGGCACGTCG GAAACCGGGC AGACGGGCAC CTTCATGCCG ACCGGCATCG CGCTGACCGC ATCGATCGGC GGGTCGCTGC GCAACTACCT GCTCACGCGC GTGAACGCGC TCGCGCAGAA AGGCCAGGCG CAACTGCGAT CGAAGCCGAA GGTGCTCGCG CTCGACAACA CCGAGGCGAT CCTCGAGAAC CTCACGCAGT TCTACGTGCA GGTGCCCGGC TATCAGGATT CGTCGCTGTA CAGCGTGACG ACCGGCACCA GCATCAAGGT GACGCCGATG ATCGTCGACG AGGCGATCCG CAATGCGGCG GCGGTGTCGG GCAACCCGCA GAGCGTGATG ATGTCGATCG ACATCCAGGA CGGCAACATC GTGCCGGGGC AGGCCGTGTC GAACGTGCCG GTGATCCAGC AGCGCAACAT CGTCACCAAG ACGATGATCG ACGAAGGCAA GAGCCTCCTG ATCGCCGGTT TCAACGATGA TGAGGTGAAG CTGAACAAGA GCGGCGTGCC CTGGCTGTCC GACATTCCGC TGATCGGCAA CCTGTTCAAG TACACCGACA AGTCGGGCAA CCACATGGAG CGGTTCTACC TGCTGACGCC GCGGGTCGTG ACGAACGCGT CGATGTACGC GCCGGACGGC TCGCCCGTGA ACCCGGGCGT CGACGGGCCG GCGAGCCAGG AAGGGATGTC GATGTATCGG CCGCCCGACA ACGACGTCGC GGTGCCGCTG ACGCCGAAGC CGCTGCCTGG CACGAAGTTC GGCCCGCCCG CGTTGCCGGC GCCACCCAAG GATGCGGCGT CGCAGCCGGT GGCGACGACC GCAGGAGCAC CCACCCATGT CGACGAGCAT CATTGA
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Protein sequence | MRRRVASIRF QPRSLQRAAL AVCATALLTA SLCMAPAQHA RAADLRWRNK PFTIVANGKK IGDFIRELAS SQGVTAVVDP KVDGVISGRF SGTPQQTLDT ICSTYGLTWY YDGSFLYVDP ADQSQTQMIP IPPNASGEIG RALQAMQIPD KRYTLVINDR ANSVYVAGPR RYVELVRQAV GSVGDPAANG AHADIRAFRL KYGWASDFTI NRSGKEVTVP GVATILRRLF GKGGGTTAAP SSTPLGQAAR QVKLGSGLTI AVPRLDFPDI SGGPRQGGYG GADSGMGGGF SPFANNGGGD TLPQIVADPA INAVIVRDLP ENMYRYQSLI NQLDERPRIV EINVTIIDIN EDSLDSLGID WRLHTTHGDV QIGNGQNALN GNTQYNGVGN PPLTFGIGTS ETGQTGTFMP TGIALTASIG GSLRNYLLTR VNALAQKGQA QLRSKPKVLA LDNTEAILEN LTQFYVQVPG YQDSSLYSVT TGTSIKVTPM IVDEAIRNAA AVSGNPQSVM MSIDIQDGNI VPGQAVSNVP VIQQRNIVTK TMIDEGKSLL IAGFNDDEVK LNKSGVPWLS DIPLIGNLFK YTDKSGNHME RFYLLTPRVV TNASMYAPDG SPVNPGVDGP ASQEGMSMYR PPDNDVAVPL TPKPLPGTKF GPPALPAPPK DAASQPVATT AGAPTHVDEH H
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