| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_3510 |
|---|
| Symbol | |
|---|
| ID | 4096317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | + |
|---|
| Start bp | 620913 |
|---|
| End bp | 623132 |
|---|
| Gene Length | 2220 bp |
|---|
| Protein Length | 739 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638016809 |
|---|
| Product | type III secretion FHIPEP |
|---|
| Protein accession | YP_623377 |
|---|
| Protein GI | 107025866 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAC CGAAGGCGCT CCCCCGCGAC TGGCAGCGGT TGTTTTCCGC CGGCCGCGGC
GTGTCCGGAC GGCGCCTCGG GGGCGCGTCG CCGCGCGCCG ACCTGTTTCT CGCGGCCTTC
ATCGTCGCGG TCGTCGCGCT GTTCATCCTG CCGCTGCCGC AGGCCGCGCT CGACGGGATG
ATCTCGCTGA ATCTCGCGGC GAGCGTCGTG CTGCTGACGG TGTCGACCTA CGTGCCGTCG
GCGGTCAGTT TCTCGTCGTT TCCCGCGCTG CTGCTGTTCA CGACGCTGTT CCGGCTCGCG
CTGAACATCG CGTCGTGCAA GCTGATCCTG CTGCATGCGA ACGCCGGCCA CGTGATCGAC
GCGTTCGGGC GGCTGGTGGT CGGCAACAAC GTGGTGGTGG GCGGCGTGGT GTTCCTCGTG
ATCGCGGTCG TGCAGTTCAT CGTGATCGCG AAAGGGTCGG AGCGGGTGGC CGAAGTCGGC
GCGCGTTTCT CGCTCGACGC GATGCCGGGC AAGCAGATGA GCATCGACGC GGACCTGCGC
GCGGGCATCA TCAGCGCCGA CGAGGCGCGC GAGCGGCGCG AGAAGCTCGA GCAGGAATCG
CAGATGCACG GCGCGATGGA CGGCGCGATG AAGTTCGTGA AGGGCGACGC GATCGCGGGC
CTCGTGATCG CGTTCATCAA CATCGTCGCA GGGATCGCGG TCGGCACGCT GATGCACGGG
ATGGACATCG GCGAGGCGCT GCAGCGTTAC GCGATCCTGA CGGTCGGCGA CGGGATGGCG
TCGCAGATTC CGTCGCTGCT GGTATCGATC GCGGCCGGCA TCGTGACCAC GCGCGTCGCG
ACGCGCGATG CACGACAGCG CCAGCTCGGC GAACAGCTCG GCGAGCAACT GGGCGCACAC
CCGCGCGCGC TGCTGATCGC GGCGTTCGTG CTGAGCGGTT TTCTCGTCGT GCCCGGTTTT
CCGAAATGGT CGTTCGCGCT GATCGCGCTT GGCCTCGGCG CCTTCGCGTT CTCGCAACTG
AAGCGCAAGA CGTCCGCGCC GAGCTTCAAC CTGATTCATG TCGCGGGGCG CGTCGGCGCG
GCCGACGACG GCCAGCCCGC GAAGGTATCG CACGCGGCGG GCGTCACGTC GCTGATCGCG
GTGTCGCTGT CCGACGACCT GCGCACGGGC CTGAACCTCG CGCAACTGCA GGCGGCGCTG
TCGAGCGCGA AGGCGCGCGT CGACGCGGAC ATCGGCACGG TGTTCCCGCG CATCACGCTG
AACGACGACG AGGGCGCGCC GGCCGGTACG TACCGGATCT ATCTGCAGGA CGTGCTCGTC
GCGCACGGCG CGCTGAAGCC GGGCTGGCTG CTGTGGGACG GCGTCGCGCC GCTGCCGGAG
CGCGCGGAGC GCCAGCCGGC CGAGGCGTTC GGCCCGTTCG CGACCGCGCT GTGGATCAAG
CCCGACGGCG CGGCGCCGGA CGGCAAGTGG CTGTCGAGCG AGAGCGCGCT GGCCGCGCAC
GTCGAGCAGA TCGTGCGCCA GCATGCGGAC GAACTGCTCG GCATCCAGGA GACGCAGGCG
CTCGTGCATC TGGTGCGCCG CGACCATCCG GAGCTGGTGG GCGAACTGAC GCGGCTCGTG
CCGTTGCAGC GCGTGACCGA AGTGCTGCGC CGGCTGCTCG CCGAACAGGT GCCGATCCGC
AACCTGCGCG TGATCTTCGA GAGCCTGATC ACGTGGGCGC CGAACGAGCC CGACGACGTG
ATCGCGCTGG TCGAGCTCGT GCGCGTCGAC CTGCGCCGGA TGATCACCGA TCGACACGCT
GGCACGGCGC GCCAGCTGCG GGTCGTGCTG TTCGAGCAGA ACCTGCAGGA GCGGATCGAG
AGCGCGGTGA TGCGCACGAA GCAGGGTAAT TTCCTCGCGC TGTCGAGTGC GGTCAAGCAG
GACATCGGCG AACAGGTGCG CGCGATCGTG CAGGCCGCGC AGGCGGCCGG CCCCGGCGGC
CACGGCAACG CGCAGGGTGG CGCGCACGGT GGCGCGCGGC TCGCGGTGAT GGTCGCGCTC
GGCGCGCGCC GCTACGTGAA GACGATCCTG CAGCCGGTGC TGCCCGAACT CGCGGTGCTG
TCGTACCAGG AAGTCGAGGA GGACGTGCAG TTGCATACGG TCGGCTGGGT GAAGAACCCG
CCGGACGACG GCACGGTCGG CGCGGGCGCC GACGTGCGCG CGCCGGGAGC CGTGCAATGA
|
|---|
| Protein sequence | MAEPKALPRD WQRLFSAGRG VSGRRLGGAS PRADLFLAAF IVAVVALFIL PLPQAALDGM
ISLNLAASVV LLTVSTYVPS AVSFSSFPAL LLFTTLFRLA LNIASCKLIL LHANAGHVID
AFGRLVVGNN VVVGGVVFLV IAVVQFIVIA KGSERVAEVG ARFSLDAMPG KQMSIDADLR
AGIISADEAR ERREKLEQES QMHGAMDGAM KFVKGDAIAG LVIAFINIVA GIAVGTLMHG
MDIGEALQRY AILTVGDGMA SQIPSLLVSI AAGIVTTRVA TRDARQRQLG EQLGEQLGAH
PRALLIAAFV LSGFLVVPGF PKWSFALIAL GLGAFAFSQL KRKTSAPSFN LIHVAGRVGA
ADDGQPAKVS HAAGVTSLIA VSLSDDLRTG LNLAQLQAAL SSAKARVDAD IGTVFPRITL
NDDEGAPAGT YRIYLQDVLV AHGALKPGWL LWDGVAPLPE RAERQPAEAF GPFATALWIK
PDGAAPDGKW LSSESALAAH VEQIVRQHAD ELLGIQETQA LVHLVRRDHP ELVGELTRLV
PLQRVTEVLR RLLAEQVPIR NLRVIFESLI TWAPNEPDDV IALVELVRVD LRRMITDRHA
GTARQLRVVL FEQNLQERIE SAVMRTKQGN FLALSSAVKQ DIGEQVRAIV QAAQAAGPGG
HGNAQGGAHG GARLAVMVAL GARRYVKTIL QPVLPELAVL SYQEVEEDVQ LHTVGWVKNP
PDDGTVGAGA DVRAPGAVQ
|
|---|
| |