Gene Bcen_3344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_3344 
Symbol 
ID4093957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008061 
Strand
Start bp433352 
End bp437836 
Gene Length4485 bp 
Protein Length1494 aa 
Translation table11 
GC content62% 
IMG OID638016643 
ProductPAAR 
Protein accessionYP_623212 
Protein GI107025701 
COG category[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown 
COG ID[COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01643] YD repeat (two copies) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0030504 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGACA CGCCGAACTA CAACGAGCCG AGCGGCAGCG CCCAGGAGCG TCTCGATCAG 
ATCGCCGGGC TGGAGGACGG TGAAGCCGCG AAAGCGGCCG AGCAGCCGTT TTACGAGCAC
CTCAACTACG GGATGCTCGG CGCCGATGCG GGCCTGACCG CCGTCGAGGG GACGGCCGCC
GGGCTGGGTG CCGCCGGTAC GGCGCTCGCG GGTGGGGCGA CCGGCGGGGC GGCACTGGGC
GCGGGCGCGA TTGCGGCGGG CACCGTCATG CTTCCGCTGG CGATTGCGGT CGGCGGTGCG
TGGGCGCTCG ACAAGGTTGG CGTGACCGGC TGGCTATCGA AGGAATTCAC GCAGGTTGGC
GACGCGCTCG GCCTCACGAT CGGTCGCGGC GATCCGCACC CCGCCTGCAT TGGCGATCGG
ATCGCGCACT CGTCGGGTTT TATGGGGATT CTCGCCGGCA TTGCCGTGGG AGTCGCGATT
GGCGTGGCAG TGGCGGCGAC CGTGGCAACC GGTGGACTCG CCGGCGCGCT GATCGTCGGC
GCGTGCATGG CGGGCGGCCT GACGCTGGGG AGTGCGCTCG CGTCGGCGAG CCAGAGCATG
GGCAGCAACT GTGGCGAGAT CGTCACCGGT TCGAGCAACG TGTACTTCGA AGGCAAGAAG
GTGGCGCGTG TCACGGACCT GGTGAAATGC GATCACCATT CCGGCGTGCC GCAGGCACTC
GTCGACGGCA GCAAGACCGT GTTCGTCAAC GGTCTGCCGC TGGTGCGGAT CGGCCACGAA
ACGCACTGTA GCGGCAAGGT CAATTCGGGG CGCAACAGCA TCTGGATCGA CAAGACGACT
GGACACTACG GTCCGAAGAA CCCGGAGTTG TCCGCGACTC AGGAATTCCT GGCGGGTTTG
CTCGGCGGGA TCGTAGGAGG CGGAGTCGGA AAATTTGCCG GCAAGGGGCT GCGGGGGTTG
CGCGAAAAAT TCAAGCCTGA GCCCACCCGA TCCGCGGAAC AGAAGGGCAT CAAGGACGAG
AACCGGCCGA CGTGCAAGGA CCCGGTTGAT CCGGTGTCCG GCGAAATGCT CGAGATCCGT
ACGGATCTCG TCATTCCCGG CATCCTGCCT CTCGAGTTCA AGCGACGCTA TCGGACTCGA
TCGGACGACC ATGGATTGCT CGGTCACCGC TGGTCGGACA ACTGGTCGCA ACAACTGACG
TTCGATGGCG GCCGCTTCGT GAGATTCCAC GACGGCGCCG GCCTGGTGAT CGGCTTTGAC
GCGCCGGATA TGGCGCTCAA CGGCATCAAC CTGCGCGAGC CGCGCTATCG GCTGGTCGGA
AGCCGGCTCG AACCGCGCAT CTTCGATCGC GATACGCGGC AACTACGTAT TTTCGCGCCG
CTCGTCGATG GGCGTTCGTC TCGCCTCGAA CGGATCGAGG ACCTCGACGG TAACGCAATC
GTTCTCTCGT ACGATATTGC CGGCCGTTTG AGTGGTATGG CCCATAGCGA CGGCTATCGG
CTCGAGATTG TTTGTCACGG GCGCGACCGA CGGCTGGAAC GGATCGTTCT TCACGATGCG
GACGGCGGTT CCCGGACACT CGTGGACTAC GACTACCAGA ACAGCATGCT TACCCACGTG
GCGAGCTTCC AGTTTGGCCA GTTCTACTAC GCGTATGACG AACACGGCTG GATGACCCAG
TGGCGGGATA CGGACCAGAC CGACGTTCGA TATCGGTACG ACACCGCTGG TCGTGTCGTC
GAGACCGGCA CGCAGCAGGG TTATCACACA GGTCGGTTCA TCTACGAGGC CGGTCGCACA
CGGGTGATCG ATGTCGACGG AGAATGGACC TATGACTATA ACGATGAAGG TCTCGTAACG
GCCGAAACCG ATCCGCTCGG CCATTGCACT CGCTCCGAAT GGGAGCTTGG TCGCTTGATG
GCCCGGATCG ATCCGCTGGG TCGACGGACG GACTATCGAT ACGACGAGCG TGGTCAACTG
ACTTCGGTCG TCGAAAGCTC GGGGAGGATG GTCGAGTTCG ACTATGACGA CGAGCAGCGC
CTTACCGGCA CGCGTTTGCC GAACGGCGGC CGGATCAGGC TCGAGTATGA CCATCTGTAT
CGATTGATTG CTCGCACCGA GCCGGACGGC AACAGAACTG CCTATCGCTA CGGCCCCCGA
GGCGAACTGC TGCGGGTGGT TCAGGGTGAT CGCGAGACGC GCCTGGACTA CGATGACCGG
TTGCGGCTGA CCGACATCGA GTTGCCGACA GGTGCGCGCT TCAGGCGCAG GATAGACGTA
CTGGGTCGGC TGCTGGAGGA GACGTCGCCC GATGGGCACG TGACGCGTTA CGACTATGCT
GACGGCCCGG CAAATCCGCG CGGTCTGCTG AGCGCGATCA CGCGCCCCGA TGGCTCGGTG
TCGAGGGCGC GATATAACAG CGAGAGCCTG CCCGTCGAGT GGATCGATCC GCTCGGACGT
ACGATCCGGC GAACCTATGG CCCGTTCGAT TTGCTTACGG CGTCGATCGA CGCGGCCGGT
CATGCAACGC GTTTCGAGTA CGACCATGCC ACCCGGCTGA CGAAGGTCAT CAATGCTCTG
GGAGAGACTT ACACGTACCG CTACGACGCG GCCGGGCGTC TCGCGGCCGA GATCGACTGG
GGCGGCCGCG CGACTCGATA TGAGCGCGAT GCCGTCGGCC GCCTGCTGGC GAAGACACTG
CCCGACGGTG GCCAGTGGCG CTATACGTAC GATGCATCCG ACCGGCTCGT CGAGATCGAT
GCCGGCGACG TGAAGCTTGC TTACCGCTAC GATGCGAGCG GACGACTGGC GTCGGCGGAG
GTCCAGGGCG AGCACGTTCA CGTGACGCGC TTTGCCTACG ACAGGAATGG CCGCTTGATC
GGAGAAGATC AGCATGGCGA ACTGTTGAGG CACGTCTACG ACGCGGACGG CCAGCGGAGC
CTTCGGCTGA CGCCTCGGCG GGAGACGGCC TATGCCTATG ATGCATTGGG TGCGCTCACG
CAGGTCGCCG GGCTGACGAT CCGGCGCGAT GGCTTAGGGC GCGAGATCGG GCGGCAGGCG
GGAGATTTTG TCGCGCAGCA ACAGTACGAT GCGCTCGGCC GTATACGCCG GCAGATTGCA
GGGCCTGCCG TAGCCTTCGA TGCGTTGCAA GCCGATCCGG CCCGGGCGCT CGAGCAATTG
ACGCGGCAGG TCTATCACTA CGACGCAGCC GGACAACTGG AGCGAGTGGA CACCGGCGCG
GATACGCTCA CCTACCAGCG CGATGAGCGC GGCCAGATCA TCTCCGCAGA AAGTCTGCTG
CAGCCAAGCG AGCACTTCCG CTATGACGCT GTGATGAACA TTGCCGCGCA CGGGCAACGG
GCACCTGTGG ATGCCCACCA CTATCGCCGC GGAGGTCTGC CGGAACAGGT TGGCTACGCA
CGCTATCAAT ACGATGCACG TGGCCGCACG ATCGAGAAGA CGGTCGAACA GCCGGGGTTC
AGGCCGAAAA CGTGGCAATA CACGTGGGAT GGCCTCAATC GGCTCGTGAA GGTCGTTACG
CCCGAGCGCG GTGTTTGGGC GTATCGCTAT GACGCTTTCA ATCGCCGGAT CGAGAAGCAG
CAAGTCGGCG GCCGTGAAAC GGTGAGGTTC CTGTGGGACG GTCCGATGCT TGCCGAGCGC
TGGATCGAGC AGCGGGATGG TACGACGGGC CAAGTCGTGA CCTGGCATAT CGAGCCGGGC
AGTTTCTCGC CGCTCGCGCA GGAGACCGAC AGCGGTATCT TTTCAATTCT GACGGACCAG
GTCGGTTTGC CAAAGGCGGC GTTCGACGAA CATGGCACGA CTGTGTGGAA GGGGGCGTAC
TCGCTGTGGG GGAAACCGCT GCCGGCCAGA CGAGCAGCGA ACGATGCGCA GGGCGCGGCA
ATTTCAATCG ATACGACGTT GCGTTTTCCC GGTCAATGGG CCGACGACGA GACGGGACTG
TGCTACAACC TGAATCGATA CTACGATCCA GATTCAGGGC AGTATCTTAG TTGCGATCCG
ATTGGCCTTG AAGGTGGATT TAGAACGCAA GGCTATGTGC ACGCGCCAGA CGCGTGGGTT
GATCCGCTGG GATTGAGCGG CTGCGAGGAC GTTAAAGAGT ACGATGTTGT TCCATATCGA
CCAAGCAATT CGCCTTTAGA AAACCACCAT GGAGTACTCG ATGTATGGAT GGCCAAGAAT
GTTCCAGATT ACGGTGGGAA ATATCCGATT AAATCGCCAA CAATTGCTTT GTCCGCTGAG
TCGCATGCTG CGACAAAGGC TGCGTACCGA GATTGGTTGA CTATGAAAAC CGGGCGCCCA
GTTGGTGGAA AAGTTGATTG GGAAGCCGTA AGCAATCGAG AAATGCAGGC GCTGTCCGAG
CAAATGTTTG ATGCTGCAAA AGTTCCGCAG GCGAGCAGGG ATGCGTACTA CAGGGCGTTG
AATCAGTATT TGTACACGGG TGAGTTTGAT CCGGTGAAAT TTTAG
 
Protein sequence
MSDTPNYNEP SGSAQERLDQ IAGLEDGEAA KAAEQPFYEH LNYGMLGADA GLTAVEGTAA 
GLGAAGTALA GGATGGAALG AGAIAAGTVM LPLAIAVGGA WALDKVGVTG WLSKEFTQVG
DALGLTIGRG DPHPACIGDR IAHSSGFMGI LAGIAVGVAI GVAVAATVAT GGLAGALIVG
ACMAGGLTLG SALASASQSM GSNCGEIVTG SSNVYFEGKK VARVTDLVKC DHHSGVPQAL
VDGSKTVFVN GLPLVRIGHE THCSGKVNSG RNSIWIDKTT GHYGPKNPEL SATQEFLAGL
LGGIVGGGVG KFAGKGLRGL REKFKPEPTR SAEQKGIKDE NRPTCKDPVD PVSGEMLEIR
TDLVIPGILP LEFKRRYRTR SDDHGLLGHR WSDNWSQQLT FDGGRFVRFH DGAGLVIGFD
APDMALNGIN LREPRYRLVG SRLEPRIFDR DTRQLRIFAP LVDGRSSRLE RIEDLDGNAI
VLSYDIAGRL SGMAHSDGYR LEIVCHGRDR RLERIVLHDA DGGSRTLVDY DYQNSMLTHV
ASFQFGQFYY AYDEHGWMTQ WRDTDQTDVR YRYDTAGRVV ETGTQQGYHT GRFIYEAGRT
RVIDVDGEWT YDYNDEGLVT AETDPLGHCT RSEWELGRLM ARIDPLGRRT DYRYDERGQL
TSVVESSGRM VEFDYDDEQR LTGTRLPNGG RIRLEYDHLY RLIARTEPDG NRTAYRYGPR
GELLRVVQGD RETRLDYDDR LRLTDIELPT GARFRRRIDV LGRLLEETSP DGHVTRYDYA
DGPANPRGLL SAITRPDGSV SRARYNSESL PVEWIDPLGR TIRRTYGPFD LLTASIDAAG
HATRFEYDHA TRLTKVINAL GETYTYRYDA AGRLAAEIDW GGRATRYERD AVGRLLAKTL
PDGGQWRYTY DASDRLVEID AGDVKLAYRY DASGRLASAE VQGEHVHVTR FAYDRNGRLI
GEDQHGELLR HVYDADGQRS LRLTPRRETA YAYDALGALT QVAGLTIRRD GLGREIGRQA
GDFVAQQQYD ALGRIRRQIA GPAVAFDALQ ADPARALEQL TRQVYHYDAA GQLERVDTGA
DTLTYQRDER GQIISAESLL QPSEHFRYDA VMNIAAHGQR APVDAHHYRR GGLPEQVGYA
RYQYDARGRT IEKTVEQPGF RPKTWQYTWD GLNRLVKVVT PERGVWAYRY DAFNRRIEKQ
QVGGRETVRF LWDGPMLAER WIEQRDGTTG QVVTWHIEPG SFSPLAQETD SGIFSILTDQ
VGLPKAAFDE HGTTVWKGAY SLWGKPLPAR RAANDAQGAA ISIDTTLRFP GQWADDETGL
CYNLNRYYDP DSGQYLSCDP IGLEGGFRTQ GYVHAPDAWV DPLGLSGCED VKEYDVVPYR
PSNSPLENHH GVLDVWMAKN VPDYGGKYPI KSPTIALSAE SHAATKAAYR DWLTMKTGRP
VGGKVDWEAV SNREMQALSE QMFDAAKVPQ ASRDAYYRAL NQYLYTGEFD PVKF