Gene Bcen_3297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_3297 
Symbol 
ID4093832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008061 
Strand+ 
Start bp383695 
End bp384660 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content69% 
IMG OID638016596 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_623165 
Protein GI107025654 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.319467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGGC AATGCAATGC AGCAATCCGA AGGATCGGCG CGGCGCTTGC CGCCGCCGCG 
TGCGTGGCGG CGCAGCCGGC GCATGCCGCC GATCCGCAGA CGTGCGACGC CGTGAAGATG 
GCGGCGCCCG GCTGGACCGA CATCGACGCG ACGAACGCGA TGGCGGGCGT CGTGCTGAAG 
GCGCTCGGCT ACCGGCAGGA CGTGGCGAAC CTGTCGGTGC CGATCACGTA CCAGGGGTTG 
AAGAAAGGGC AGGTCGACGT GTTCCTCGGC AACTGGATGC CCGCGCAGGC GCCGCTCGTG 
AAGCCGTTCG TCGACGAAAA ATCGATCGAC GTGCTGCACG CGAACCTGAG TGGTGCGAAA 
TTCACGCTCG CGGTGCCCGA CTACGTGGCC GCGGCCGGCG TGCACACGTT CGCCGATCTC 
GCGCGCTACG CGGACCGTTT CGGCGGCAAG ATCTACGGGA TCGAGCCCGG CGCACCCGCG 
AACCAGAACA TCAAGCGGAT GCTGTCCGAC CACGTGCTGG GGCCCGCGAA CCGGTCGCTC 
GTCGAATCGA GCGAGACGGG CATGCTCACG CAGGTCGAGC GGGCGGTGCG CGACAAGCGC 
TGGATCGTGT TTCTCGCGTG GGAGCCGCAT CTGATGAACA CGAAGTTTCA TCTGACGTAT 
CTGTCGGGCG GCGATGCGTA CTTCGGCCCG AACTACGGCG GCGCGACGGT CAACACGGTC 
ACGCGTGCCG GGTTCGCCGG CCAGTGCACG AACCTCGCGC GGCTGTTCCG GCAGATGACG 
TTCTCCGTCG ACGTCGAGAA CCGGATGATC GCCGACATGC TCGACAACAA GACCTCGCCC 
GCACTCGCGG CGCAACATGC GCTGAAGGCC GAGCCGGCGC TGGTCGCCGG CTGGCTCGAC 
GGCGTGACGA CGGCGGCCGG CGCGCCGGGC CTGCCGGCCG TGCGCGCGGC CCTCGACGGC 
CGCTGA
 
Protein sequence
MKRQCNAAIR RIGAALAAAA CVAAQPAHAA DPQTCDAVKM AAPGWTDIDA TNAMAGVVLK 
ALGYRQDVAN LSVPITYQGL KKGQVDVFLG NWMPAQAPLV KPFVDEKSID VLHANLSGAK 
FTLAVPDYVA AAGVHTFADL ARYADRFGGK IYGIEPGAPA NQNIKRMLSD HVLGPANRSL 
VESSETGMLT QVERAVRDKR WIVFLAWEPH LMNTKFHLTY LSGGDAYFGP NYGGATVNTV 
TRAGFAGQCT NLARLFRQMT FSVDVENRMI ADMLDNKTSP ALAAQHALKA EPALVAGWLD 
GVTTAAGAPG LPAVRAALDG R