| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_2088 |
|---|
| Symbol | |
|---|
| ID | 4091253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008060 |
|---|
| Strand | - |
|---|
| Start bp | 2305158 |
|---|
| End bp | 2306960 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638015368 |
|---|
| Product | tetratricopeptide TPR_2 |
|---|
| Protein accession | YP_621962 |
|---|
| Protein GI | 107023635 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.311183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCCGG AAGGCAGATG CGGGCACCGC CGCACCGGTC CGGCGGCCTG CGCACACGTG
CGCGGCGCCC ATGCCGCGGC GCGTCGCGCG GGCGGTAAGA TGCGCGTATT GCGGTGCGCC
ACGCGTGCCG CGTCACCGCT TGCCGACGCC GACTGCATGG ACGACCCGAA CGACATCCTG
ATTCCGCTGC TTCCGCCGTT TCTCGCGCTG CTCGGGCAGG CCGCCGACGC GCAGGCGCGC
GGCGAGCGCG CCGCGCACGA TCTGTGGCTG GCCGCTGCGG CCCATCTGCA TGCGGTCGAT
GCCGATGCGC TGGTGCGGCT CACGACGACG CTCGTCGCGC GGCAGCGCCC GGCCGACGCG
CTCGCGCTCG CCGAATGCGC GGTGCGCGTG CAGCCGGGCG CGGCCACGCA CTTCAACCAC
GGCTACGCGC TGCAGATGGC CGGCCGTCAC GCGGATGCGG TCGCGCCGTA CCGCGCGGCG
CTCGCGATCG ATGCCGGCTG GCCGTCGCTG CGCAACAACC TCGCGATCGC GCTGCGCTTG
TCGGGCGCGG ATCGCGCGGA AGAAATCGCG CTGCTCGACG CGGCCGTGAA GCACGATCCG
CGGGACGTGC AGGCATGGAT CAACCTCGTC GTCGCGCGGA TCGCGACGCA CGACCTGGAC
GCTGCGCTCG CGTGCGCAGC GCGGCTCGCC GACCTCGCGC CCGACAACGC GCTCGCGATG
AACAACGTCG CGATGGCGAT GAAGGAGGCG CAGCGCTGGG ACGAGGCCGA GCGCCATGCG
GCGCGCGCAT GCGAGCTGGC GCCCGACGAT GCGTCGTTCC GTTTCAATCT CGCGATCATC
CAGCTCGTGC GCGGCAACCA CGCGGCCGGC TGGCGCGGCC ACGAGGCGCG CTGGGACGGC
GCGGGCGAGT TGCGCGGCCG CCGGCCGGCG CTGCCGGGCC CGCGCTGGCA GGGCGAGCCG
CTCGCCGGCA AGACGCTGCT GGTGTGGGGC GAGCAGGGGC TCGGCGACGT GCTGCAGTTC
TGCCGCTTCG TCGTGCCGCT CGCCGAGCGC GTGCATCGCG AGGGCGGCCG GCTCGCGTGG
AATACGTTTC CGGCGCTCGG CACGCTGATG CAGCGCAGCC TCGGTGCGCA CGCGGACGTG
TTCGGCGCGG GCGGCGGCAT CGATGCGTTG CCGGCATTCG ATTACGAAGT GCCGCTGATC
GGCCTGCCGC TGATGCTCGG CATGGAGGCG TCGACGCTCG CCGCCTCGGT GCCGTACCTG
CGGGCCGAGC CGGGTGCTCG CGACGCGTGG CGCGCGCGGC TCGCCCGCGA CGGCCGGCTG
AAGGTCGGGC TCGTGTGGAC GGGCAGTGCG GGCCACCAGC GCAATCCGTT CCGGCGCGTC
GGGCTCGAGC GCTACGCCGA CGCGTTTCGC GGCATCGACG GCGTCACGTT CTATTCGCTC
CAGCCGGGTG CGGACACGGA CGTCGCCGCC GCGCGCGCGG CCGGTTTCGC GATCGAGGAC
TACACGGCCG AATTGACGAG TTTCGACGAT ACGGCCGCGT TCATCGGCGC GCTGGATCTC
GTGATCACCG TGTGCACGTC GGTCGCGCAT CTGGCCGGCG CGCTCGGCGC GCGCACCTGG
GTGCTGCTCG ACGTGAATCC GCACTGGCCG TGGCTGCTCG AGCGCCGGGA CAGCCCGTGG
TATCCGACCG CGACGTTGTA CCGGCAGCCG ACGTTCGGCG CGTGGGCGCC GGTGATGGAG
GAAGTCAGCC GCGATCTGCG GCGCATCGCC GCGCAGCCGG AGCAACTGGG CCAACTGGAC
TAA
|
|---|
| Protein sequence | MRPEGRCGHR RTGPAACAHV RGAHAAARRA GGKMRVLRCA TRAASPLADA DCMDDPNDIL
IPLLPPFLAL LGQAADAQAR GERAAHDLWL AAAAHLHAVD ADALVRLTTT LVARQRPADA
LALAECAVRV QPGAATHFNH GYALQMAGRH ADAVAPYRAA LAIDAGWPSL RNNLAIALRL
SGADRAEEIA LLDAAVKHDP RDVQAWINLV VARIATHDLD AALACAARLA DLAPDNALAM
NNVAMAMKEA QRWDEAERHA ARACELAPDD ASFRFNLAII QLVRGNHAAG WRGHEARWDG
AGELRGRRPA LPGPRWQGEP LAGKTLLVWG EQGLGDVLQF CRFVVPLAER VHREGGRLAW
NTFPALGTLM QRSLGAHADV FGAGGGIDAL PAFDYEVPLI GLPLMLGMEA STLAASVPYL
RAEPGARDAW RARLARDGRL KVGLVWTGSA GHQRNPFRRV GLERYADAFR GIDGVTFYSL
QPGADTDVAA ARAAGFAIED YTAELTSFDD TAAFIGALDL VITVCTSVAH LAGALGARTW
VLLDVNPHWP WLLERRDSPW YPTATLYRQP TFGAWAPVME EVSRDLRRIA AQPEQLGQLD
|
|---|
| |