Gene Bcen_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_1952 
Symbol 
ID4092485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand
Start bp2153701 
End bp2155212 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content69% 
IMG OID638015233 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_621828 
Protein GI107023501 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.370807 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATCAAAC CGTTCCGCTC GATCGAATCG GCGGCCACCG CGACGCACAA CTGGCGGCGC 
CGTCAGATCC TGCGCGCGGG GGCGTCGACG CTGGTGCTCG GTCTCGTCGC GCCGCGGCTC
GCGCACGCGT CGTCGGTGCT CGGCGTGCGC GTGTGGCCCG CACGCGATTA CACGCGCGTC
ACGATCGAAT CCGACCAGCC GCTGCAGAAT AGCCAACAGC TGCTGCAGGG TCCCGACCGT
CTCGTCGTCG ACCTGAGCGG CCTCGACCTC GACCAGGCGC TGCGCGACCT CGTCTCGAAG
ATCGCGCCGA ACGATCCGCA GATCCAGTCG GTGCGCGTCG GCCAGTATCA GCCACACGTC
GTGCGGATGG TGTTCGACCT GAAAGGCTCG GTGAAGCCGC AGGTGTTCAC GCTGCCGCCC
GTCGGCACGT ACAAGTACCG GCTGGTGTTC GACCTGTATC CGGCCGTCGC GCCCGATCCG
CTGTCCGACC TGATCGCGCA GACGGAACGC AAGGAACAGG CGCTCAACGA CACCGCGCGC
GCGCAGCAGA TGCAGCCGCC GTCCACGCTG GCGGGCCCCG GCACCCCGCC GCCCGGCGCG
GGCGACAACA GCGACGCATT CTTCCAGCGT TTCGCGCAGA ACACGCCGGC CACGCCGCAC
GCGCCGCCGG CCGCCGGCAC GCCGTCGACG CCCGCGAAGC CGGCCGTCAA GCCGCCGCCC
GTCATCGCGC GCCGCGACGA CAGCGACGAC GACGGCGACA CCTACAAGTT CACCGCGCCG
AAATCCGGCA AGGGCGGCAC CGTGCGTCTG CTGACGGTCG CGATCGACCC GGGCCACGGC
GGCGAGGATC CGGGCGCGAT CGGCGGCAAC GGCACGTACG AGAAGCACAT CGCGCTCGAC
ATCGCGAAGA AGCTGCGCGC GAAGATCGAC GCCGCGCCGA ACATGCGCGC GATGATGACG
CGCGACGCCG ACTTCTTCGT GCCGCTGAAC GTGCGCGTGC AGAAGGCGCG CCGCGTCGGC
GCGGATCTCT TCGTGTCGAT CCACGCGGAT GCGTTCACGA CGCCGTCCGC ACGCGGCTCG
TCGGTGTTCG CGCTGTCCGA CCACGGCGCG ACGAGCGCCG CGGCGCGCTG GATGGCGAAC
AAGGAGAATT CGTCGGACCT GATCGGCGGC ATCAACATCA AGACGGCGGA CGCGGCCGTG
AACCGCGCGC TGTTCGACAT GTCGACGACC GCGCAGATCC GCGACTCGCT GCGCTACGGC
AACTACGTGC TGAAGGAAGT CGGCGGCATC AACAAGCTGC ACAAGGGCTC GGTCGAGCAG
GCCGGGTTCG CGGTGCTGAA GGCGCCCGAC ATTCCGTCGA TCCTCGTCGA GACCGCGTTC
ATCAGCAACC CGGACGAAGA GCGCCGGCTC AACGACGACA GCTATCGCGA CGAGATGGCC
GACGCGATCT TCCGCGGCAT CAAGCGCTAT TTCGCCGCGA ATCCGCCGCT CGCGAAGAGC
CGGATGGCCT GA
 
Protein sequence
MIKPFRSIES AATATHNWRR RQILRAGAST LVLGLVAPRL AHASSVLGVR VWPARDYTRV 
TIESDQPLQN SQQLLQGPDR LVVDLSGLDL DQALRDLVSK IAPNDPQIQS VRVGQYQPHV
VRMVFDLKGS VKPQVFTLPP VGTYKYRLVF DLYPAVAPDP LSDLIAQTER KEQALNDTAR
AQQMQPPSTL AGPGTPPPGA GDNSDAFFQR FAQNTPATPH APPAAGTPST PAKPAVKPPP
VIARRDDSDD DGDTYKFTAP KSGKGGTVRL LTVAIDPGHG GEDPGAIGGN GTYEKHIALD
IAKKLRAKID AAPNMRAMMT RDADFFVPLN VRVQKARRVG ADLFVSIHAD AFTTPSARGS
SVFALSDHGA TSAAARWMAN KENSSDLIGG INIKTADAAV NRALFDMSTT AQIRDSLRYG
NYVLKEVGGI NKLHKGSVEQ AGFAVLKAPD IPSILVETAF ISNPDEERRL NDDSYRDEMA
DAIFRGIKRY FAANPPLAKS RMA