Gene Bcen_0942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_0942 
Symbol 
ID4093763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand+ 
Start bp1026824 
End bp1027750 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content65% 
IMG OID638014213 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_620824 
Protein GI107022497 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.000643298 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGACCA AGCTGATGGC CGTCGCGGCC GCCGCGATCC TGGCTGCGCC GCTCGCGCAT 
GCCGAGAAGA TCGGCGTGAC GATGGCATCG TTCGACGACA CGTTCCTGAC CATCCTGCGC 
AACAGCATCG CCGATTCGGC GAAGAAGGAC GGCGCGACGG TGCAGATCGA GGACGGCGGC 
AATGACGTCG GCAAGCAGTT GAGCCAGGTC CAGAACATGA TCGCGCAGAA GGTCGACGCG 
ATCATCGTGA ATCCGGTCGA TACCGACGCG ACGCCGAAGA TCACGAAGAT GGTGACCGCG 
GCGAAGATCC CGCTCATCTA CGTGAACCGC AAGCCGGTCG ACTTCGACAA GCTGCCGGCC 
GGCGTCGCGG TCGTCGCGTC CGACGAAAAG CAGTCGGGCA CGCTGCAGGC GCGCCAGGTG 
TGCAAGCTGC TCGGCGGCAA GGGCGACCTC CTGGTGCTGA TGGGCGAGCT GTCCAACGAA 
TCGGCGCGTG CCCGTACCAA GGACATCGAG GACGTGATCG CGACGAAGGA ATGCGCGGGC 
ATGAAGATCG TCGACAAGCG CGAAGGCAAG TGGAGCCGCA CGCAGGGCCA GGACATCACG 
ATGAACTGGC TGAGCTCCGG GACCAAGTTC GACGCGATCG TGTCGAACAA CGACGAAATG 
GCGATCGGCG CGATCAACGC GCTGAAGGCC GCACGCAAGC TCACGCCGAA GACGGTCGTC 
GCGGGTATCG ACGCGACGCC GGACGGGCTC GCCGCGATGA AGGCCGGCGA GCTGAAGGTG 
TCGGTCTACC AGAACGCGAC CGGGCAGGGC GCGCAGGCGG TGGCCGCGGC GCTCAAGCTC 
GCGAAGAAGC AGCCGGTCGA TCGCTACGTG AACGTGCCGT TCGAGCTCGT GACGCCGGAG 
AACATGAACC AGTACGCGAA GCACTGA
 
Protein sequence
MKTKLMAVAA AAILAAPLAH AEKIGVTMAS FDDTFLTILR NSIADSAKKD GATVQIEDGG 
NDVGKQLSQV QNMIAQKVDA IIVNPVDTDA TPKITKMVTA AKIPLIYVNR KPVDFDKLPA 
GVAVVASDEK QSGTLQARQV CKLLGGKGDL LVLMGELSNE SARARTKDIE DVIATKECAG 
MKIVDKREGK WSRTQGQDIT MNWLSSGTKF DAIVSNNDEM AIGAINALKA ARKLTPKTVV 
AGIDATPDGL AAMKAGELKV SVYQNATGQG AQAVAAALKL AKKQPVDRYV NVPFELVTPE 
NMNQYAKH