Gene Bcen_0549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_0549 
Symbol 
ID4091767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand
Start bp593117 
End bp595024 
Gene Length1908 bp 
Protein Length635 aa 
Translation table11 
GC content72% 
IMG OID638013814 
ProductTPR repeat-containing protein 
Protein accessionYP_620433 
Protein GI107022106 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGACCG GCCGATACGC GGCCCCGCCG CGCGGTGTGG GAAAATACGC GCTTTCCGCC 
AGTTTTCGCG TCATGGATTC CGCATTCGAC CACGCGTACG CCGCGCACCG CGCGGGCCGC
CTCGCCGAGG CCGAGCACGG CTATCGCAAC GCGCTCGCCT CCAACCCCGC CGATGCCGAC
GCGCTGCACC TGTTCGGCGT GCTGCGGCAC CAGCAGGGCC AGCACGCCGA GGCGGCCGAT
CTCGTCGGCC GCGCCGTCGC GCTGCGTCCG GACGACGCCG CGCTGCAGCT CAATCTCGGC
AACGCGCTGA AAGCGCTCGG CCGGCTCGAC GAAGCGATCG ACCGCTTTCG CAACGCGCTG
ACGCTCGCGC CCGAATTTCC GCTCGCGCAC TACAACCTCG GCAACGCGTA TGCGGCACTG
CAGCGTCACG ACGATGCGAT CGACGCCTTC GGCCGTGCGC TACGGCTCAC GCCCGACGAC
GCATCGATCC ACAACAATCT CGGCAACGCG CTGAACGCGC TCGGCCGCCA CGACGACGCG
CTCGCCGCGT TCGGTCGCGC ACTCGAGCTC CGGCCCGGGC ATGCGGGTGC GCACAACAAC
CTCGCGATGG CGCTGAGCGC GATGGGTCGC GCCGACGAGG CGATCACGCA CTTCCAGGCC
GCGATCGCCG CGCAGCCGCG GTTCGTCGCC GCGCATTTCA ATCTCGGCAA CACGCTCGAC
GCGGTCGGCC GGCATGCCGA GGCAGCCGCG GCATTCGAAG CCGCGCTCGC GCTGCACCCG
CCGTTTCCGC TCGCGCTGTT CGGGCTCGCG AATGCGCTCT GCGCGCAGGC GCGCCACCGC
GACGCGCTGC CCTACTACGA GCGCGCCGTC GGGCTCGATC CGTCGTTCGG GCTCGCATGG
CTGAATCTCG GCAACGCGCA TCACGCGCTC GGCGCGCACG AGATGGCGCT GCGTGCTTTC
GACCAGGCGC TGCGGGTCGC GCCCGATCTC ACGCTCGCGC GGCTGCACCG CGCGGTCACG
CTGCTGACGC TGCGCGACTT CACGCGCGGC CTGCCCGCCT ACGAAGCGCG CCACGAGACG
CCCGGCGCGA CACCGCTCGG CGTGCTGCCG CGCTGGCACG GCGAGCCGAT CGCGTCGCGC
ACGCTGCTGA TCCGCGCGGA ACAGGGGTTC GGCGACACGC TGCAGTTCGT CCGCTTCGTG
CCGCTGGCCC GCGCACGCTG CGCGCGCGTG GTGCTCGAAG TCCAGCCGGA ACTCGTCGCG
CTGCTGACGC CGGCCGCATC GCGCTGGCGC GTGACGCTCG TCCCGCAGGG CGCCGCGAAG
CCGCCTGCCG CGGACGTCGC GTGCACGCTG ATGAGCCTGC CGTTCCTGCT CGGGCTGCAG
CCGGACGACA TCATCGGCTC GCGCTACCTC GACGCACCCG ACGGCGCCCG GCGACGCTTT
CGCGGTTCGC TCGGCGGGCA ATCGAAGCGC AAGTTCGGCC TGGCATGGTC GGGGCGCCGG
CAGGCGCAGG AAAACCGCTC GATGCCGTTC GACGCGCTCG CGCCGCTGCT CGCGCTGCCG
GACATCGACT GGATCGTGCT GCAGCCCGCG CTCGACGACG ACGAACGGGC GCGCGTCGAC
GCGCATCCGC GCGTGCATCG TCTCGACGGC CGGCTGAACG ACTTTGCCGA TACGGCCGCG
CTGATCGAAC GCCTGGACGG CGTCGTCACG ATCGACACGG CGGTCGCGCA CCTCGCGGGC
GCGCTCGGCA AGCCGCTGTG GGTCATGCTG CCGTTCGCGG CCGACTGGCG CTGGTTCACC
GGCGACGACT GTCCGTGGTA TCCGCGAGCC AGGATCGCCC GCCAGCCGGC CCCGGGCGCG
TGGCGCGACG TGGCGGCCTC AGTGGCCGAC ATGCTGCGCA ACGCATGA
 
Protein sequence
MPTGRYAAPP RGVGKYALSA SFRVMDSAFD HAYAAHRAGR LAEAEHGYRN ALASNPADAD 
ALHLFGVLRH QQGQHAEAAD LVGRAVALRP DDAALQLNLG NALKALGRLD EAIDRFRNAL
TLAPEFPLAH YNLGNAYAAL QRHDDAIDAF GRALRLTPDD ASIHNNLGNA LNALGRHDDA
LAAFGRALEL RPGHAGAHNN LAMALSAMGR ADEAITHFQA AIAAQPRFVA AHFNLGNTLD
AVGRHAEAAA AFEAALALHP PFPLALFGLA NALCAQARHR DALPYYERAV GLDPSFGLAW
LNLGNAHHAL GAHEMALRAF DQALRVAPDL TLARLHRAVT LLTLRDFTRG LPAYEARHET
PGATPLGVLP RWHGEPIASR TLLIRAEQGF GDTLQFVRFV PLARARCARV VLEVQPELVA
LLTPAASRWR VTLVPQGAAK PPAADVACTL MSLPFLLGLQ PDDIIGSRYL DAPDGARRRF
RGSLGGQSKR KFGLAWSGRR QAQENRSMPF DALAPLLALP DIDWIVLQPA LDDDERARVD
AHPRVHRLDG RLNDFADTAA LIERLDGVVT IDTAVAHLAG ALGKPLWVML PFAADWRWFT
GDDCPWYPRA RIARQPAPGA WRDVAASVAD MLRNA