Gene Bcen_0549 details

Gene Information

• Locus tag: Bcen_0549
• ID: 4091767
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia AU 1054
• Kingdom: Bacteria
• Replicon accession: NC_008060
• Strand: -
• Start bp: 593117
• End bp: 595024
• Gene Length: 1908 bp
• Protein Length: 635 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 638013814
• Product: TPR repeat-containing protein
• Protein accession: YP_620433
• Protein GI: 107022106
• COG category: [R] General function prediction only
• COG ID: [COG0457] FOG: TPR repeat

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGACCG GCCGATACGC GGCCCCGCCG CGCGGTGTGG GAAAATACGC GCTTTCCGCC 
AGTTTTCGCG TCATGGATTC CGCATTCGAC CACGCGTACG CCGCGCACCG CGCGGGCCGC 
CTCGCCGAGG CCGAGCACGG CTATCGCAAC GCGCTCGCCT CCAACCCCGC CGATGCCGAC 
GCGCTGCACC TGTTCGGCGT GCTGCGGCAC CAGCAGGGCC AGCACGCCGA GGCGGCCGAT 
CTCGTCGGCC GCGCCGTCGC GCTGCGTCCG GACGACGCCG CGCTGCAGCT CAATCTCGGC 
AACGCGCTGA AAGCGCTCGG CCGGCTCGAC GAAGCGATCG ACCGCTTTCG CAACGCGCTG 
ACGCTCGCGC CCGAATTTCC GCTCGCGCAC TACAACCTCG GCAACGCGTA TGCGGCACTG 
CAGCGTCACG ACGATGCGAT CGACGCCTTC GGCCGTGCGC TACGGCTCAC GCCCGACGAC 
GCATCGATCC ACAACAATCT CGGCAACGCG CTGAACGCGC TCGGCCGCCA CGACGACGCG 
CTCGCCGCGT TCGGTCGCGC ACTCGAGCTC CGGCCCGGGC ATGCGGGTGC GCACAACAAC 
CTCGCGATGG CGCTGAGCGC GATGGGTCGC GCCGACGAGG CGATCACGCA CTTCCAGGCC 
GCGATCGCCG CGCAGCCGCG GTTCGTCGCC GCGCATTTCA ATCTCGGCAA CACGCTCGAC 
GCGGTCGGCC GGCATGCCGA GGCAGCCGCG GCATTCGAAG CCGCGCTCGC GCTGCACCCG 
CCGTTTCCGC TCGCGCTGTT CGGGCTCGCG AATGCGCTCT GCGCGCAGGC GCGCCACCGC 
GACGCGCTGC CCTACTACGA GCGCGCCGTC GGGCTCGATC CGTCGTTCGG GCTCGCATGG 
CTGAATCTCG GCAACGCGCA TCACGCGCTC GGCGCGCACG AGATGGCGCT GCGTGCTTTC 
GACCAGGCGC TGCGGGTCGC GCCCGATCTC ACGCTCGCGC GGCTGCACCG CGCGGTCACG 
CTGCTGACGC TGCGCGACTT CACGCGCGGC CTGCCCGCCT ACGAAGCGCG CCACGAGACG 
CCCGGCGCGA CACCGCTCGG CGTGCTGCCG CGCTGGCACG GCGAGCCGAT CGCGTCGCGC 
ACGCTGCTGA TCCGCGCGGA ACAGGGGTTC GGCGACACGC TGCAGTTCGT CCGCTTCGTG 
CCGCTGGCCC GCGCACGCTG CGCGCGCGTG GTGCTCGAAG TCCAGCCGGA ACTCGTCGCG 
CTGCTGACGC CGGCCGCATC GCGCTGGCGC GTGACGCTCG TCCCGCAGGG CGCCGCGAAG 
CCGCCTGCCG CGGACGTCGC GTGCACGCTG ATGAGCCTGC CGTTCCTGCT CGGGCTGCAG 
CCGGACGACA TCATCGGCTC GCGCTACCTC GACGCACCCG ACGGCGCCCG GCGACGCTTT 
CGCGGTTCGC TCGGCGGGCA ATCGAAGCGC AAGTTCGGCC TGGCATGGTC GGGGCGCCGG 
CAGGCGCAGG AAAACCGCTC GATGCCGTTC GACGCGCTCG CGCCGCTGCT CGCGCTGCCG 
GACATCGACT GGATCGTGCT GCAGCCCGCG CTCGACGACG ACGAACGGGC GCGCGTCGAC 
GCGCATCCGC GCGTGCATCG TCTCGACGGC CGGCTGAACG ACTTTGCCGA TACGGCCGCG 
CTGATCGAAC GCCTGGACGG CGTCGTCACG ATCGACACGG CGGTCGCGCA CCTCGCGGGC 
GCGCTCGGCA AGCCGCTGTG GGTCATGCTG CCGTTCGCGG CCGACTGGCG CTGGTTCACC 
GGCGACGACT GTCCGTGGTA TCCGCGAGCC AGGATCGCCC GCCAGCCGGC CCCGGGCGCG 
TGGCGCGACG TGGCGGCCTC AGTGGCCGAC ATGCTGCGCA ACGCATGA 

 

Protein sequence

MPTGRYAAPP RGVGKYALSA SFRVMDSAFD HAYAAHRAGR LAEAEHGYRN ALASNPADAD 
ALHLFGVLRH QQGQHAEAAD LVGRAVALRP DDAALQLNLG NALKALGRLD EAIDRFRNAL 
TLAPEFPLAH YNLGNAYAAL QRHDDAIDAF GRALRLTPDD ASIHNNLGNA LNALGRHDDA 
LAAFGRALEL RPGHAGAHNN LAMALSAMGR ADEAITHFQA AIAAQPRFVA AHFNLGNTLD 
AVGRHAEAAA AFEAALALHP PFPLALFGLA NALCAQARHR DALPYYERAV GLDPSFGLAW 
LNLGNAHHAL GAHEMALRAF DQALRVAPDL TLARLHRAVT LLTLRDFTRG LPAYEARHET 
PGATPLGVLP RWHGEPIASR TLLIRAEQGF GDTLQFVRFV PLARARCARV VLEVQPELVA 
LLTPAASRWR VTLVPQGAAK PPAADVACTL MSLPFLLGLQ PDDIIGSRYL DAPDGARRRF 
RGSLGGQSKR KFGLAWSGRR QAQENRSMPF DALAPLLALP DIDWIVLQPA LDDDERARVD 
AHPRVHRLDG RLNDFADTAA LIERLDGVVT IDTAVAHLAG ALGKPLWVML PFAADWRWFT 
GDDCPWYPRA RIARQPAPGA WRDVAASVAD MLRNA