Gene Bcen_0236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_0236 
SymbolsecD 
ID4090843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand
Start bp251224 
End bp253245 
Gene Length2022 bp 
Protein Length673 aa 
Translation table11 
GC content68% 
IMG OID638013496 
Productpreprotein translocase subunit SecD 
Protein accessionYP_620123 
Protein GI107021796 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGTT ATCCACTCTG GAAATATGTC GTGATGGTCG TGGCGCTCGC CATCGGCCTT 
CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCCACGGTCA AGCTCGACTC GACCACGCTG ACCCAGGTCG AATCGGCACT CGCGTCCGCG
CAGATCAAGC CGGACGACGT CACCTTCGAG AACACGGCGA CCAGCGCGAA CATCCGCGTG
CGCCTGAAGG ACACCGATAC GCAGCTGCGC GTCAAGGACC TGCTGCAGAA GTCGCTGAAT
GCCGACCCGA ACGATCCGCA GTACGTCGTC GCACTGAACC TGCAGAGCGC GTCGCCGCGC
TGGCTGACCG CCCTGCACGC GCTGCCGATG TATCTCGGCC TCGACCTGCG CGGCGGCGTG
CACTTCCTGC TCCAGGTCGA CATGACGGGC GCGCTCACGA AGAAGCTCGA CTCCGACGCG
TCCGACGCGC GCTCGCTGCT GCGCGACAAG AACATCCGCG ACGGCGGCGT GAGCCGCGTC
GAGCAGTCCG TGGTCGTCAA CTTCAGCGAT GCGCAGACGG CGGAAGACGC CCGCAAGGTG
CTCGCCGCGT CGATCACCGA GCTGCAATGG GCGACCCAGC CCGGCGGCGG CGGCACGCAA
GTCGTCGGCA CCTTCACGCC GGCCGTGCAG AAGTCGGTCG AGGACGCCGC GCTCAAGCAG
AACCTGACGA CGCTCCACAA CCGCGTGAAC GAGCTCGGCG TGTCCGAGCC GATCCTGCAG
CAGCAAGGCA GCGACCGCAT CGTCGTCGAA CTGCCGGGCG TGCAGGACAC CGCGAAGGCG
AAGGACATCA TCGGCCGCAC CGCGACCCTC GAGGCGCGCC TGGCCGACCC GATCAACACG
CACCCGAACC CGAACGACCC CGTGCCGCCG GGCGAGGAGC TGTTCACGCA AGGCAACCAG
GCGCCCGTGC TGCTGAAGAA GGACGTGATC TTCACCGGCG ACCGCATCAT CGACGCATCG
GCCGGCTTCG ACGAACACCA GCGTCCGTCG GTCAACATCC GCCTCGACTC GGCGGGCGGC
CGCGCGGTGC GCACGGTGTC GCGCGACAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC
GAGAAGGGCA AGGGCGAAGT GCTGACGGTC GCGACGATCC AGTCCGAGCT CGGCGACCGC
TTCCAGATCA CGGGCCAGCC GACGCCGCAG GCCGCGGCCG ACCTCGCGCT GCTGCTGCGC
GCCGGCTCGC TCGCGGCGCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC
GGCGCCGACA ACATCAAGAT GGGCGTGCAC TCGGTGATCT GGGGCTTCTG CGCGATCGCC
GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTGGTGT CGGTGATCGG GCTGTCGGTG
AACCTGCTGC TGCTCGTCGC CGTGCTGTCG CTGATGCAGG CGACGCTGAC GCTGCCCGGT
ATCGCGGCCA TCGCGCTCGC GCTCGGTATG GCGATCGACT CGAACGTGCT GATCAACGAG
CGCGTGCGCG AAGAACTGCG CGCCGGCCAG CCGCCGCAGC TCGCGATCCA GGCCGGCTAC
GCGCATGCGT GGGCGACGAT TCTCGACTCG AACGTCACGA CGCTGATCGC CGGTCTCGCG
CTGCTTGCGT TCGGTTCGGG CCCGGTTCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC
CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGGC TCGTCAACCT CTGGTACGGC
GGCCGCAAGA AGCTGAAGTC GCTCGCGATC GGCCAGGTGT GGAAGCCGGA AGGCGCCGCT
GCCGCCGCGT CGTTCACCGA CGAGGACGAA TCGACCGACA CCGCGCGCGC CGCGAAGCTC
GCCGCCCCGG CGAAGGGCAA CGCGCCGCGC GCCGGCAAGC CGCAGCTGCG CAACCGCGCG
CAGCAAGGCG TGTCGCCGAA GAAACCGGGC TCGACCCAAT AA
 
Protein sequence
MNRYPLWKYV VMVVALAIGL LYTLPNFFGE APAVQVSSGK ATVKLDSTTL TQVESALASA 
QIKPDDVTFE NTATSANIRV RLKDTDTQLR VKDLLQKSLN ADPNDPQYVV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARSLLRDK NIRDGGVSRV
EQSVVVNFSD AQTAEDARKV LAASITELQW ATQPGGGGTQ VVGTFTPAVQ KSVEDAALKQ
NLTTLHNRVN ELGVSEPILQ QQGSDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPINT
HPNPNDPVPP GEELFTQGNQ APVLLKKDVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG
RAVRTVSRDN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR
AGSLAAPMDI IEERTIGPSL GADNIKMGVH SVIWGFCAIA VFMIAYYMLF GVVSVIGLSV
NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RVREELRAGQ PPQLAIQAGY
AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG
GRKKLKSLAI GQVWKPEGAA AAASFTDEDE STDTARAAKL AAPAKGNAPR AGKPQLRNRA
QQGVSPKKPG STQ