Gene Bcen_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_0008 
Symbol 
ID4091878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand
Start bp8351 
End bp10675 
Gene Length2325 bp 
Protein Length774 aa 
Translation table11 
GC content67% 
IMG OID638013265 
ProductType II secretion system gspD 
Protein accessionYP_619897 
Protein GI107021570 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02517] general secretion pathway protein D 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAGAA ATCGCTTCGT TATGCGGCGT ATCGCCACGA CCCTGCTCGT GGCAGGCATC 
ATCGTCTCGC AGGCCGCCTA CGCTCAGGTC ACGCTCAATT TCGTGAATGC GGATATCGAC
CAGGTCGCGA AAGCGATCGG CGCCGCGACC GGCAAGACCA TCATCGTCGA CCCCCGCGTG
AAGGGGCAGC TCAATCTCGT GGCCGAACGG CCGGTGCCGG AAGACCAGGC ATTGAAGACG
CTGCAGTCGG CGCTGCGCAT GCAGGGCTTC GCGCTCGTGC AGGATCACGG CGTGCTGAAG
GTCGTGCCGG AAGCCGACGC GAAGCTGCAG GGCGTGCCGA CCTACATCGG CAATGCGCCG
CAGGCGCGCG GCGACCAGGT GATCACGCAG GTGTTCGAGC TGCACAACGA ATCGGCGAAC
AACCTGCTGC CGGTGCTGCG GCCGCTGATC TCGCCGAACA ACACGGTGAC GGCCTACCCG
GCGAACAACA CGATCGTCGT GACCGACTAT GCGGACAACG TGCGCCGCAT CGCGCAGATC
ATCGCGGGCG TCGACAGCGC CGCGGGCGCG CAGGTGCAGG TCGTGCCGCT GCGCAACGCG
AACGCGATCG ACCTCGCCGC GCAACTGCAG AAAATGCTCG ACCCGGGCGC GATCGGCAAC
AGCGACGCGA CGCTGAAGGT ATCGGTCACG GCCGACCCGC GCACCAACGC GCTGCTGCTG
CGTGCGTCGA ACGCGTCGCG CCTCGCGGCC GCGAAGCGTC TCGTGCAGCA GCTCGACGCG
CCGAGCGCGG TGCCCGGCAA CATGCATGTC GTGCCGCTGC GCAACGCCGA TGCGGTGAAG
CTCGCGAAGA CGCTGCGCGG GATGCTCGGC AAGGGCGGCA ACGACAGCGG CTCGTCGGCG
TCGTCCAACG ATGCGAACAG CTTCAACCAG AACGGCGGCT CGTCGTCGAG CGGCAACTTC
TCGACCGGCA CGTCGGGCAC CCCGCCGCTG CCGTCGGGCG GCCTGGGCAG TTCGTCGTCG
TCGTCCGGGT ATGGCGGCGG CTCGTCCGGC GGTGGCCTCG GTACCGGCGG CCTGCTCGGC
GGTGACAAGG ACAAGAGCGG CGACGACAAC CAGCCGGGCG GGATGATCCA GGCCGACTCG
GCCACCAACT CGCTGATCAT CACCGCGTCC GATCCGGTGT ACCGGAACCT GCGCTCGGTG
ATCGACCAGC TCGACGCACG GCGTGCGCAG GTCTATATCG AAGCGCTGAT CGTCGAGCTC
AACTCGAATA CGTCCGGCAA CCTCGGCATC CAGTGGCAGG TGGCGAGCGG CCAGTTCCTC
GGCGGTACGA ACCTGAATCC CACGGGCGGT TTGGGCAACA GCATCATCAA CCTGACGACG
GGCGGCACGG CGGCCACCGC CGGGTTGGCC GCCAATCTCG CGAACCTGAA CCAGGGCCTC
AACATCGGCT GGTTGCACAA CATGTTCGGC GTGCAGGGGC TCGGCGCGCT GCTGCAGTAT
TTTGCGGGCG TGAGCGACGC GAACGTGCTG TCGACGCCGA ACCTGATCAC GCTCGACAAC
GAGGAAGCGA AGATCGTCGT CGGCCAGAAC GTGCCGATCG CGACCGGTTC GTATTCGAAC
CTGACGAGCG GCACGACGAG CAACGCGTTC AACACCTACG ACCGTCGCGA CGTCGGCCTG
ACGCTGCACG TGAAGCCGCA GATCACCGAC GGCGGGATCC TGAAGCTGCA GCTCTATACC
GAGGATTCGG CGGTCGTCGC CGGCACGACG AACGCGCAGA CCGGCCCGAC CTTCACGAAA
CGCTCGATCC AGTCGACGAT CCTGGCCGAC AACGGCGAGA TCATCGTGCT CGGCGGCTTG
ATGCAGGACA ACTACCAGGT GTCGAACAGC AAGGTGCCGC TGCTCGGCGA CATCCCGTGG
ATTGGCCAGT TGTTCCGCTC CGAAACGAAG CAGCGCGCGA AAACCAACCT GATGGTGTTC
CTGCGCCCGG TGATCATTTC CGATCGCAGC ACCGCGCAGG CAGTCACCGC GAACCGCTAC
GACTACATCC AGGGCGTGAC GGGCGCCTAC AAGTCGGACA ACAACGTGAT GCGCGACAAG
GACGACCCGG TCGTCCCGCC GATGCCGCTG GGTCCGAGCC AGGGCGGCAC GCCGGCCGGC
AATCTGTTCG ATCTCGACAA GATGCGTCGC CAGCAGTTGC AGCGCCAGGT GGTGCCCGTG
CCTGCCCAGC CATTGCCGGA AGCAACGCCC GCGCAGCCGC AAAGCGTGCC GCAGCAGGCG
GTGCCGCAAC AGCCGCTGAC CACCGCGCCG GGAGCCTCGC AGTGA
 
Protein sequence
MTRNRFVMRR IATTLLVAGI IVSQAAYAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV 
KGQLNLVAER PVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYIGNAP
QARGDQVITQ VFELHNESAN NLLPVLRPLI SPNNTVTAYP ANNTIVVTDY ADNVRRIAQI
IAGVDSAAGA QVQVVPLRNA NAIDLAAQLQ KMLDPGAIGN SDATLKVSVT ADPRTNALLL
RASNASRLAA AKRLVQQLDA PSAVPGNMHV VPLRNADAVK LAKTLRGMLG KGGNDSGSSA
SSNDANSFNQ NGGSSSSGNF STGTSGTPPL PSGGLGSSSS SSGYGGGSSG GGLGTGGLLG
GDKDKSGDDN QPGGMIQADS ATNSLIITAS DPVYRNLRSV IDQLDARRAQ VYIEALIVEL
NSNTSGNLGI QWQVASGQFL GGTNLNPTGG LGNSIINLTT GGTAATAGLA ANLANLNQGL
NIGWLHNMFG VQGLGALLQY FAGVSDANVL STPNLITLDN EEAKIVVGQN VPIATGSYSN
LTSGTTSNAF NTYDRRDVGL TLHVKPQITD GGILKLQLYT EDSAVVAGTT NAQTGPTFTK
RSIQSTILAD NGEIIVLGGL MQDNYQVSNS KVPLLGDIPW IGQLFRSETK QRAKTNLMVF
LRPVIISDRS TAQAVTANRY DYIQGVTGAY KSDNNVMRDK DDPVVPPMPL GPSQGGTPAG
NLFDLDKMRR QQLQRQVVPV PAQPLPEATP AQPQSVPQQA VPQQPLTTAP GASQ