| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3172 |
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| Symbol | |
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| ID | 4082508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 3326431 |
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| End bp | 3329076 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638011557 |
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| Product | ribonuclease |
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| Protein accession | YP_618208 |
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| Protein GI | 103488647 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0592866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.271417 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCT GCGGCGCGCT TGGAGTGTTA CCAATGACCA CGCGCATGTT GATCGACGCG
CGGCACCGGG AAGAAACCCG GGTCGCCGTC ACCAAGGGAA ACCGCATCGA GGAGTTTGAT
TTCGAGTCCG CCGAGCACAA GCAGCTCAAG GGAAATATCT ATCTGGCCAA GGTAACCCGC
GTCGAACCGT CGCTGCAGGC GGCGTTCGTC GAATATGGGG GCAACCGCCA CGGATTCCTG
GCATTCAGCG AAATCCACCC CGATTATTAC CAGATTCCCA AGGAAGACCG CGAAGCATTG
CTGCGCGAAG AGGCCGAACA TGCCGCCGCC GCGGCGCAGC GTGCCGAGGA CGATCTCGAC
GAGCTGGAGG GCGATGTCGC CGACGTCGAG GAGCATGACG ACGAAAATGG CGACGCCCCC
GCGCCCGAAA CGATCGGCGA AGGCGAAGGC GAGGACGACG GCGAGAATGG CGATGCCGAC
AATGGCGACG CCGATGGCGA AGAGGGCGCC GAGGAGGGCA GGGAAAACCG CGGCGACCGC
AAGCGCCGCG GGCGCGACGG GCGCAAGGGC GGCCGGGGCC GCGGCCGACG CAGCGACGAG
GAGGATGGCG AAAGCCGCAT GTCGCTGCGC CGCCGCTACA AGATCCAGGA CGTCATCCGC
CGCCGCCAGG TGATGCTGGT GCAGGTCGTC AAGGAAGAGC GCGGCAACAA GGGGGCGGCG
CTCACCACCT ATCTGTCGCT GGCCGGCCGC TACTGCGTGC TGATGCCCAA CACGATGCAC
GGTGGCGGTA TCAGCCGCAA GATTTCGAAC GGCGCCGATC GCCGCAAGCT GAAGGCGATG
ATCGACGAGA TGAACCTGCC GCCGACGATG GGCTGCATCG TTCGCACGGC GGGCATGAGC
CGTACCAAGA CCGAGATCAA GCGCGACTTC GACTATCTCG CGCGCCTGTG GGACGAGATT
CGCGAAAAGA CGCTGGCGTC GAGCGCGCCC GCGCTCATCC ATTCGGACAG CGACCTGATC
AAACGCGCGA TCCGCGACAT TTATCACAAG GACATCGAGG AAGTGCTCGT CGAGGGCGAC
GAGGGCTACA AGGCGGCGAA GCAGTTCATG AAGCTCTTGA TGCCGAGCCA CGCGCGGCGC
GTGAAGCAAT ATGCCGATCC CGTCTCGCTC TATCAGCGCT ACGGCGTCGA AGACCAGCTT
GCCGGGATGC TCAATCCCGT CGTCCAGCTG AAATCGGGCG GCTATCTGGT GATCAACCCG
ACCGAGGCGC TGGTGTCGAT CGACATCAAC TCGGGCCGGT CGACGCGCGA GCATAATATC
GAACAGACGG CGCTCAGCAC CAATCTGGAG GCCGCGGCCG AAATCGCGCG CCAGCTGCGC
CTGCGCGACA TGGCGGGGCT GATCGTCATC GACTTCATCG ACATGGATCA TGGCTCGAAC
GTCCGCAAGG TCGAGCGCGC GATGAAGGAG GCGCTGAAGA ACGATCGCGC GCGCATCCAG
GTCGGCCGCA TTTCGGGTTT CGGCCTGATG GAAATGAGCC GCCAGCGGCT GCGCACCGGG
GTGCTCGAAG CCTCGACGCG GCCCTGTCCG CATTGCGAGG GCACCGGGCT CGTCCGCACT
GCATCGTCGG CGGGGCTCAG CGCGCTGCGC CTGATCGAAG AGGAAGCGGC GCGCGGCAAG
GGCAGCAAGA TCACGCTGCG TGCGAGCCAG GAAGCGACCT TCTACCTGCT CAACGAAAAG
CGCCGCGAAC TGCACGAAAT CGAGGAGCTT TACGGCGTCA GCGTCGAAAT CCTGCCGGAC
GGCGAGACCG AGGGCGCGCG CATGGCGATC GAGGTCGGCG GCCCGCCGCC CACCCAGCGC
CGCAGCTTCG CCCCGATCGA GCCGATCGAG GATGATGAGG ACGACATCCC CGAAGAGGAG
GATGAAGAGG AAAGCGACGA GGACGCATCG GACAGCCGCG CGCCCGCGCG GGCCCGTGAC
GAAAGCGACA CCGATGGCGA GGGCCGCAAG CGCCGCCGCC GTCGTCGCCG CAGCCGCCGC
GGTCGCCGCG ACGAGGAAGG CACCGAAGGC GCCGAGGATG CGCCCTCCGC GGTGGACGAT
GTCCAGGAAA CGGCAGGCGA CGCCGAAGCC GCGTCGACGA CCGACGAGGC ACCGGGAACC
GATGCCGAGG CCGAACCTGC CGCGAAAAAA CCGCGCCGTC GCGGCGGACG CGGGCGCAAG
AAGGGCGACG AGGCCAATAG CGCAACCGAC GCCGACGCAG CGACCGCCGA ACCGGCACCG
GAGCCCGAAG CGGCGACCGA CGCGCCGCTG CCGCAAGCAG CCGACGCAAC GGTCGAGGCA
GTCGCGGCCG AAGACAAGCC GAAACGCAAA CGCGCACCGC GCAAGACCAA GGCGGCGCTG
GCCGCCGAGG CTGCAGCGGA GGCCGAAGCG GCCGAAGCCC CCGTCACCGA CGCCCCTGCC
GAAGCCGCCG AACCCGCGCC GAAGAAGCGC GCGAGCCGAG CGAAAAAGGC CGTCGCAGCC
GAAGCGACCA GCGAAGCTGC GACCCAAAGC GCCGCCGAAC CGGTCGCCGC CGACGCGGGC
GAGACCGGCG AGGCGGCGGA TGGCGAACCG CGCCGCGGCT GGTGGCAGCG CACGTTCGGC
AATTGA
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| Protein sequence | MARCGALGVL PMTTRMLIDA RHREETRVAV TKGNRIEEFD FESAEHKQLK GNIYLAKVTR
VEPSLQAAFV EYGGNRHGFL AFSEIHPDYY QIPKEDREAL LREEAEHAAA AAQRAEDDLD
ELEGDVADVE EHDDENGDAP APETIGEGEG EDDGENGDAD NGDADGEEGA EEGRENRGDR
KRRGRDGRKG GRGRGRRSDE EDGESRMSLR RRYKIQDVIR RRQVMLVQVV KEERGNKGAA
LTTYLSLAGR YCVLMPNTMH GGGISRKISN GADRRKLKAM IDEMNLPPTM GCIVRTAGMS
RTKTEIKRDF DYLARLWDEI REKTLASSAP ALIHSDSDLI KRAIRDIYHK DIEEVLVEGD
EGYKAAKQFM KLLMPSHARR VKQYADPVSL YQRYGVEDQL AGMLNPVVQL KSGGYLVINP
TEALVSIDIN SGRSTREHNI EQTALSTNLE AAAEIARQLR LRDMAGLIVI DFIDMDHGSN
VRKVERAMKE ALKNDRARIQ VGRISGFGLM EMSRQRLRTG VLEASTRPCP HCEGTGLVRT
ASSAGLSALR LIEEEAARGK GSKITLRASQ EATFYLLNEK RRELHEIEEL YGVSVEILPD
GETEGARMAI EVGGPPPTQR RSFAPIEPIE DDEDDIPEEE DEEESDEDAS DSRAPARARD
ESDTDGEGRK RRRRRRRSRR GRRDEEGTEG AEDAPSAVDD VQETAGDAEA ASTTDEAPGT
DAEAEPAAKK PRRRGGRGRK KGDEANSATD ADAATAEPAP EPEAATDAPL PQAADATVEA
VAAEDKPKRK RAPRKTKAAL AAEAAAEAEA AEAPVTDAPA EAAEPAPKKR ASRAKKAVAA
EATSEAATQS AAEPVAADAG ETGEAADGEP RRGWWQRTFG N
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