Gene Sala_3166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_3166 
Symbol 
ID4082502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp3315826 
End bp3317445 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content66% 
IMG OID638011551 
ProductFAD dependent oxidoreductase 
Protein accessionYP_618202 
Protein GI103488641 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAG CCTGTGACGC CCTGATTATC GGCGCCGGCC ACAACGGCCT CGTCTGCGCC 
TTCTATCTCG CGAGGGCGGG GTTGAAGGTG CGGATCGTCG AGGCGCGCGA CGTCGTCGGC
GGCGCCGCGG TGACCGAGGA GTTCGCGCCG GGCTTCCGCA ACTCGGTCGC GAGCTACACG
GTCAGCCTGC TCCAGCCAAA GGTGATCGCC GACATGCGCC TTGCCGATCA TGGCTATCGC
GTGATCGAAC GCCCGATCAG CAATTTCCTG CCGCAGGAGG ATGGCGGCTA TTTGAAGCTC
GGCGGCGGGC TTGAACGCAC GCAGGCCGAG TTCGCCAAGT TCAGTGCGCG CGATGCCGAG
GTGCTGCCCG CCTATTATGA CGCACTCGAA AATGTCGCCG AACTGCTCCG CGACCTCGCA
CTGCGCGTCC CGCCCAACGT CGGCGAGGGG CTGCGCACCT TGCTCGACGG CGCGCGGCAG
GGGCGGCGCT TCGCAGGCCT CAGCCTCGAA CAGCAGCGCG ACGTGCTCGA CCTCTTCACC
AAATCGGCGC GCACGATGCT CGACAGCTGG TTCGAAAGCG AAGCGGTCAA GGCCGCCTTC
GGCTTCGATG CCGTGGTCGG CAACTACGCC AGCCCGGACA CGCCGGGCAG CGCCTATGTC
CTTCTGCACC ACGTCTTTGG CGAGGTGAAC AGCAGGAAGG GCGCGTGGGG GCACAGCGTC
GGCGGCATGG GCCGGATTAC CGAGATCATG GCGAAGGTTT GCCGCGATCA TGGCGTCGAG
ATCAGCCTCG AAAGTCCGGT CGCGAAAGTG CTGGTTGACG GAGGCAAAGC CGTCGGGGTG
AGGCTTGTAG GCGGCGAAGA AATCGCCGCG GCGCGCGTGA TCGCCAATGT CGGGCCGAAA
CTGCTCTACG AACGGCTGAT GGACGCCGCC GATCTGCCCG CCGACTTCCA GCGGCGGATC
AGCGGCTTCA AGGTCGGAAG CGGAACATTC CGCATGAATG TCGCGCTGTC CGAGCTTCCC
CGTTTCACCT GCCTGCCCGA ACCCGGCGAG CACCACCAGT CGGGAATCAT CCTCGCCCCG
ACGCTTGATT ATATGGACCG CGCCTTCCTC GATGCGAAAC AATATGGCTG GTCGAAGGCG
CCGATCGTCG AAATGCTGAT CCCCTCGACC GTCGACGACA GCCTCGCGCC TGAAGGCTGT
CACGTTGCGA GCCTCTTCTG CCAGCAATTC GCGCCTGAAT TGCCCGCCAA AGAAGACGGG
ACTCTCCGCG ACTGGGACGA TGAGGAGGAA GCTGCCGCCG ACTGCATCCT CGACACCGTC
GAAAAACACG CGCCGGGTTT CCGCGCGAGT ATCGTCGGCC AGACGCGGCT GTCGCCCAAG
GGGCTCGAAC GCAAGTTCGG CCTCGTCGGC GGCGACATCA TGCACGGCAA TATGAGCCTT
GACCAGCTCT GGGCCGCGCG CCCGGTGCTC GGTAATGGCG GCTATCGCGG GCCGGTGAAG
GGGCTGTATA TGTGCGGCGC GGGCACGCAT CCGGGCGGCG GCGTCACCGG CGCGCCGGGG
CATAATGCGG CTGCAGTGAT CCTACGCGAC CGGGGGCTCT TCGCGCCCCG CTGGCGCTGA
 
Protein sequence
MTKACDALII GAGHNGLVCA FYLARAGLKV RIVEARDVVG GAAVTEEFAP GFRNSVASYT 
VSLLQPKVIA DMRLADHGYR VIERPISNFL PQEDGGYLKL GGGLERTQAE FAKFSARDAE
VLPAYYDALE NVAELLRDLA LRVPPNVGEG LRTLLDGARQ GRRFAGLSLE QQRDVLDLFT
KSARTMLDSW FESEAVKAAF GFDAVVGNYA SPDTPGSAYV LLHHVFGEVN SRKGAWGHSV
GGMGRITEIM AKVCRDHGVE ISLESPVAKV LVDGGKAVGV RLVGGEEIAA ARVIANVGPK
LLYERLMDAA DLPADFQRRI SGFKVGSGTF RMNVALSELP RFTCLPEPGE HHQSGIILAP
TLDYMDRAFL DAKQYGWSKA PIVEMLIPST VDDSLAPEGC HVASLFCQQF APELPAKEDG
TLRDWDDEEE AAADCILDTV EKHAPGFRAS IVGQTRLSPK GLERKFGLVG GDIMHGNMSL
DQLWAARPVL GNGGYRGPVK GLYMCGAGTH PGGGVTGAPG HNAAAVILRD RGLFAPRWR