| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3160 |
|---|
| Symbol | |
|---|
| ID | 4082496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3308629 |
|---|
| End bp | 3309498 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638011545 |
|---|
| Product | senescence marker protein-30 (SMP-30) |
|---|
| Protein accession | YP_618196 |
|---|
| Protein GI | 103488635 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCAAC TGCTCCTCGA CGCCCGCGCA TTGCTCGGCG AATCGCCCTT CTGGCACGCA
GCCGAAGCGC GCCTCTACTG GGTCGATATC GAGGGTTGCA AAATCCACCG CACCGATCCG
GCGACGGGGA CCGACGCGGT GATGGAACTC GCCGAACAGG TCGGCTGCAT CGCGCCGCGC
GCGAACGGCG GCCTCGTCGC CGCGCTCGAA AATGGCTGCG CGCTCATCGA CGACTGGGGC
GCCGCGCCGC GGCCCTTCGG CCCCCCGGTG CTGGCCGACA AGCCGCGCCA GCGCTTCAAC
GACGGCCGCG TCGATGCGGC AGGGCGGCTG TGGGTCGGCA GCCTGACCAG CGACAAGCCG
AAACGCGACG CGGCGCTGTA CCGGCTCGAT CCCGATGGCA CCCTCACCGA AATCTTCGGC
GGATTGATGA CGAGCAACGG CGCGGCGTTC AGCCCCGACG GGCGCATCTT CTATCATGCC
GACACGCCGA CGCACTCTAT CCACGCCTAT GACGTCGATC CGGCGACCGG CGCGCTGGGC
GGCAAGCGGC TGTTCCATCG CTTTGCCGAG GGCGAGGGCC GCCCCGACGG CGCCGCGGTC
GATGCCGAGG GCTGCTATTG GTCGGCGCTG TGGGACGGCT GGCGCGTCGT GCGCCTGTCG
CCGGCGGGCG AATTGCTGCA CACGGTCGAC CTGCCGGTGC AGCGCCCGAC GATGATCGCC
TTTGGCGGCG CCGACCTCAA AACCGCCTTC GTCACCAGCG CGGGCAAGAA TCTGACCGAT
GCGGAGCGTG CGGGGCAGCC GCACGCGGGG GGCGTCTTTA TGTTCGACGT AGAGGTGCCG
GGGCTCGCGC AGGAAATGTT CGCGGGGTAA
|
|---|
| Protein sequence | MVQLLLDARA LLGESPFWHA AEARLYWVDI EGCKIHRTDP ATGTDAVMEL AEQVGCIAPR
ANGGLVAALE NGCALIDDWG AAPRPFGPPV LADKPRQRFN DGRVDAAGRL WVGSLTSDKP
KRDAALYRLD PDGTLTEIFG GLMTSNGAAF SPDGRIFYHA DTPTHSIHAY DVDPATGALG
GKRLFHRFAE GEGRPDGAAV DAEGCYWSAL WDGWRVVRLS PAGELLHTVD LPVQRPTMIA
FGGADLKTAF VTSAGKNLTD AERAGQPHAG GVFMFDVEVP GLAQEMFAG
|
|---|
| |