| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3108 |
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| Symbol | |
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| ID | 4082695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 3256229 |
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| End bp | 3259291 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638011494 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_618145 |
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| Protein GI | 103488584 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.2566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGAAAA CCCACTATTC CAAGCTGAAA CTGGGTGCCG CGCCGCTCGT GCTGAGCGTC
GCCCTGGTTT CGGCTCCTGC CTATGCGCAG GACGCCGAGG AAGGCGCCAC CGGTTCGTCG
GAAATCGTCG TTACCGGTAC GCTGATCCGC AATCCGAACC TCGAACAGTC GACGCCGGTC
AACGTCACGA CCGCCGACAC CATCGAGCTG AAGCAGTCGA ACGTCGCCGA AGAGGTTCTG
CGCGAACTGC CCGGCGTGGT CGCGAACATC GGTTCGGCGG TCAACAACGG TAACAGCGGT
GCGTCGTACG TCGACCTTCG CGGTCTCGGT TCGATCCGCA ACATCGTGCT GCTGAACGGC
AACCGCGTTG CGCCGTCGGA CGTCAACGGC CGCGTCGACC TCAACAACAT CCCGCTCGCG
CTGATCGAGC GCGTCGATGC GCTCACCGGC GCGGCGGTGA CCACCTATGG CGCCGACGCG
ATCACCGGCG TCGTCAACTT CGTCACCAAG CGCGATTTCG CAGGTCTCGA AGTCACCGCG
TCGAACCAGA TCACCGAAGA GGGCGACGGC CACATCTTCC GCGTCGACGC GACGATCGGC
GCGAACTTCG ACGACGGTCG CGGCAACGCG GTGCTGAGCA TCGGTTACCA GCAGGCCGAC
CCCGTCTATC AGGGCGCACG TCCTTTCTCG AACGACACGC TCGACAGCTA TTCGAACCAG
TTCATTGGTT CGGGCACCTC GGTTCCGTCG CGTTTCTCGG GCACCCGTCC GCTCGATCCG
GTCACCGGCC AGCCGAGCAC CGATCCGACG GTGGCCAATG GCGGCCTGCG CCAGGTCAAC
GCGGCGGGTG CTGCGGTTCC GACCTTCGCA ACCTATAACT TCAATCCGTT CAACATCTTC
CAGACGCCGT TCGAGCGCTT CAACATCTAC GCTCAAGCCA ATTATGAAGT GTCGGACTCG
GTTGAAGTCT ATACGCGCGG CATGTTCTCG AAGAACACCG TTTCGACGAT CATCGCCCCC
TCGGGTTCGT TCGGCGGCAC GGTGACGGTC AACCTCAACA ATCCCTATCT GCCGTCGACC
CTGCGCAACC AGTTCTGTGC ATTCAACGTC GCCGCGGCAG GATCGGGCCT CTATACCCCG
CGCTTCACGC CCGCCGAATG TGCGGCTGCG GCCACCGCGA CGGGTCGTAC CGATCCGAAC
TATCGTGAAG TGACCGTCAC GCTGAACCGT CGCACGCCCG AAGTCGGTCC GCGTATCAGC
GACTATCAGA CGACCTTCTT CGACTATCGC GTCGGCGCCC GCGGCGGCAT CACCGACACG
ATCGACTGGA GCGTCGAGGG CGCCTATGGC GAATCGGAAA ATATCCAGAC GATTCAAAAC
TATACGCTGC AATCGCGCTT CCGCGAAGCC GCGCTGGCGA ACAACACGAC GACCTGTCAG
AGCGGCAACG CCAACTGCGT TCCGGTCAAT CTGTTCGGCC CCGAAGGCTC GATCACGCCC
GAAATGGCCG ATTATCTGTC GGAAAACAGC TCGACGACCA ACCGCACCTC GCTGGCGCAG
GTTCGTGCGA TCGTCTCGGG CGACCTCGGC TTCGCCTCGC CGGGCGCGGT TCAGCCGATC
GGCTTCGCGC TGGGCGGCGA ATATCGCAAA TATACCGCGC AGCAAGCGTC GGATCTGCTC
GCCAAGACGC CGGGTGAACT CGGCGGCGCC GGTGGTGCGG CCCCGGACAT CGACGGCGCC
TATGACGTCT ATGAAGCCTA TGCCGAAATC GTCGCGCCGC TGATCGAGGA CAAGCCTTTC
TTTGAAAGCC TGACCCTCGA AGCCGGCGTG CGCTATTCGG ATTACAGCAT CGAAGGCGCT
GGCGGCTATG ACACCTGGAC CTGGAAAGCC GGCGGCAGCT GGGAACCGGG CGCGGGTGTC
AAGTTCCGCG GCAACTACAG CCGCGCGGTC CGCGCGCCGA ACATCGGCGA GCTGTTCACG
CCGCAGACGG TTGGCCTCAC CAACCTCGGC ATCGACCCCT GCGCCGGTGC GGCGCCGACG
ACCGACGCCA ACCTGCGCGC GGTCTGTATC GCGCAGGGCG CTCCGGCGGG GACGATCGGT
TCGATCACCA ACCCGACCGC GGCGCAGGCC AATATCACGG TCGGCGGTAA CCTGAACCTG
CAGCCCGAAA AGGCGGACAC CTGGACGATT GGTCTGGTCT GGCAGCCGGA CTTCCTGCCG
CGCTTCAACA TGTCGATCGA CTATTACAAC ATCAAGATCA ACGACGTGTT GGGCACCCCG
CTGCCGGGCG ACATCATCGC CGCCTGTTTC GACAATGTCA CGGCGGCGAG CGCAAGCGAC
CCCGCCTGTA CGTCGATCCG CCGCAACCCG ATCACCGGCG GTCTCGACGG CGATCCGTCG
ACCACGCCCG GCCTGTTCGG CCTGACGAAC AACCAGGGCC GCCTGTTCAC CGACGGTATC
GACCTGTTGA TGAACTACAG CACCGACCTT GGCTTCGCCA GCCTCGACTG GTCGTTCGTC
GGCAACTGGA CGAACAGCTC GAAGTTCAAC GCCAATGTCG CCAACCCGGA TTCGCTCAAC
CGCGAATGCG TCGGCTACTA CAGCGTGAAC TGCTCGTTCA CCGGCTCGAT CCAGCCGGAG
TTCCAGTTCT CGAACCGCTT CACGCTGGGC TTCGACAAGG TTGACCTGTC GCTGCTGTGG
CGCTGGATCG ACCGGGTCGA TTTCGAACCC CAGCAGCTGC AGGACGACAT CGACGCCGCG
GTTGCTGCTG GCACCAGCCC GACCACCGGT TGTCCGGACC CGACGGGAAC CGACCCGAAC
GGCTGCGTCG TCGATCCGCA GTTCCGCTCG GTCAAGGCGC AGCACTATTT CGACCTGACG
GCGCGTTTCA ACGTCAGCGA GAATCTGGTG TTCACCGCGA CGGTGCAGAA CCTGCTCGAC
AACAAGCCGC CGCTGCTCGG CAACACGATC GGTTCGACCA CCTACAACAG CGGCAATACC
TATCCGTCGA CCTACGACGC GCTGGGCCGC CGCTATGCGG TGTCGGCGAA GCTGAAGTTC
TAG
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| Protein sequence | MKKTHYSKLK LGAAPLVLSV ALVSAPAYAQ DAEEGATGSS EIVVTGTLIR NPNLEQSTPV
NVTTADTIEL KQSNVAEEVL RELPGVVANI GSAVNNGNSG ASYVDLRGLG SIRNIVLLNG
NRVAPSDVNG RVDLNNIPLA LIERVDALTG AAVTTYGADA ITGVVNFVTK RDFAGLEVTA
SNQITEEGDG HIFRVDATIG ANFDDGRGNA VLSIGYQQAD PVYQGARPFS NDTLDSYSNQ
FIGSGTSVPS RFSGTRPLDP VTGQPSTDPT VANGGLRQVN AAGAAVPTFA TYNFNPFNIF
QTPFERFNIY AQANYEVSDS VEVYTRGMFS KNTVSTIIAP SGSFGGTVTV NLNNPYLPST
LRNQFCAFNV AAAGSGLYTP RFTPAECAAA ATATGRTDPN YREVTVTLNR RTPEVGPRIS
DYQTTFFDYR VGARGGITDT IDWSVEGAYG ESENIQTIQN YTLQSRFREA ALANNTTTCQ
SGNANCVPVN LFGPEGSITP EMADYLSENS STTNRTSLAQ VRAIVSGDLG FASPGAVQPI
GFALGGEYRK YTAQQASDLL AKTPGELGGA GGAAPDIDGA YDVYEAYAEI VAPLIEDKPF
FESLTLEAGV RYSDYSIEGA GGYDTWTWKA GGSWEPGAGV KFRGNYSRAV RAPNIGELFT
PQTVGLTNLG IDPCAGAAPT TDANLRAVCI AQGAPAGTIG SITNPTAAQA NITVGGNLNL
QPEKADTWTI GLVWQPDFLP RFNMSIDYYN IKINDVLGTP LPGDIIAACF DNVTAASASD
PACTSIRRNP ITGGLDGDPS TTPGLFGLTN NQGRLFTDGI DLLMNYSTDL GFASLDWSFV
GNWTNSSKFN ANVANPDSLN RECVGYYSVN CSFTGSIQPE FQFSNRFTLG FDKVDLSLLW
RWIDRVDFEP QQLQDDIDAA VAAGTSPTTG CPDPTGTDPN GCVVDPQFRS VKAQHYFDLT
ARFNVSENLV FTATVQNLLD NKPPLLGNTI GSTTYNSGNT YPSTYDALGR RYAVSAKLKF
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