| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3068 |
|---|
| Symbol | |
|---|
| ID | 4083076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 3217026 |
|---|
| End bp | 3219059 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638011454 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_618105 |
|---|
| Protein GI | 103488544 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.412331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAG ACACCCCCAT TTCCGTCACG ATGGAAAAGG ATGGCGAAAT CGCCGTCATC
ATCGTCAACA ACCCCCCCGT GAACGCGCTG AGCTGGCACG TCCGTCAGGG GCTCGCAGAT
CATTTCAAGG CCGCGCTGGC CGACGACAGC GTGAAAGCGA TCGTGCTGCG CTGCGCCGGC
GCGACCTTCA TCGCGGGCGC CGACATCAGC GAATTCGGCA AGCCGCCGCG CGGTCCCGAT
TTCAACGCGG TGCTCAACAG CATCGAAGTG GCCTCAAAGC CCGTCGTCGC CGCGATCCAC
GGCACCGCGC TCGGCGGCGG GCTGGAGACC GCGCTCGTCT GCCATTATCG CATCGCCGTT
CCCTCGGCGA AGCTCGGCGT GCCCGAAGTC AAGCTGGGCC TGCTGCCCGG TGCGGGCGGT
ACGCAGCGCC TGCCGCGCAT CGTCGGCGTC GAAGCCGCGG CGACGATGAC CTCGACCGGC
GATCCGGTGC CGGCGCCCAA GGCGAAGGAG ATGGGGCTGG TCGATGAACT CGCGGGTGAG
GACAGCCTGG CCGCCGATGC CATCGCCTTT GCGCGCGCGA AGATCGCCGA CGGCCCGCGC
CCGACGCGCG AACGCCCGGT GTTTGGCGAC GTCGCGGTGA TCGAACGGCT GAAGGCCGCC
AATGCCAAGC GCTGGCGCGG GTTCGAGGCA CCTTACGCCA ACCTCGCCTG CGTCGAGGCG
GCGACGCGGC TGCCCTTCGA CGAAGGCCTC GCCTTCGAGC GCGAGCAGTT CATGAAGCTG
ATGTTCGGCA GCCAGTCGGC GGCGCAGCGC CACATCTTCT TTGCCGAACG CCAGGCGGCG
AAGATCGACG GCCTGCCCAA GGACACAAAG CTGCGCGACG TCAAAAAGGT CGGCATCATC
GGCGCCGGGA CGATGGGCGG CGGGATCATG ATGAACTTTC TGCAAAAGGG CATCCCCTGC
ACGATCGTCG AAATGGCGCA GGATGCGCTC GACCGCGGGC TTGGCGTCGT GCGCAAGAAT
TACGACGCCA GTGCCGCCAA GGGCCGCTTC ACGCCCGAAC AGGTCGACCA GATGATGGGA
CTGATCACCC CCTCGCTGAG CCTCGACGAC CTGGCCGACT GCGACCTCAT CATCGAGGCG
GTCTATGAGA ATATGGACGT CAAGAAGGAC ATTTTCGGCA AGCTCGACAC GATCGCCAAG
CCCGGCGCGA TCCTCGCGTC GAACACCTCC TATCTCGATA TCGACGAGAT CGCGACCGCG
ACGAACCGCC CCGGCGACGT GCTGGGCATG CATTTCTTCT CGCCCGCCAA TGTGATGAAA
CTGCTCGAAG TCGTGCGCGG CGAAAAGACC GCGCCCGACG CGCTGGCGAC CGCGATGGCT
ACGGGCAAGA AGATCGGCAA GGTCGCGGTG GTTGCGGGCG TATGCGACGG CTTCATCGGC
AACCGGATGC TCAAACCGCG CCAGATGGAG GCGATGAAGC TGCTGCTCGA AGGGGCGACC
CCGGCGCAGG TCGACAAGGT TCATGTCGAT TTCGGCATGC CGATGGGGCC GTTCCAGATG
AGCGACCTTG CCGGCGTCGA CATCGGCTGG CACCGCGACC CGAACCGCAT CGAAAACATC
CGCGACGCGC TGTGCGCCGA GGGCCGCTGG GGCCAGAAGA AGCAGGCGGG TTTTTACGAT
TATGACGAGA AACGCAACCC GTCGGAAAGC CCGCGCGTTG CCGAGATCAT CGAGGAGTTC
CGCAAAAAGG CCGGTATCGA AAAGCGCGAA ATCACCGACC AGGAGATCAT CGAGCGCACC
CTCTATCCCA TGGTCAACGA AGGTGCGCGG ATCCTGGAGG AAGGCAAGGC GCAACGGGCA
TCGGACATCG ATGTCGTCTG GATCTATGGC TATGGCTGGC CGGTCTATCG CGGCGGCCCG
ATGTTCTGGG CGGGGCTGGA AGGCACCGAC AAGATCGTCG CCGCGCTCGA AAAGCACGGG
TTCGAGATCG CACCTCTGCT GAAAGCGAAG GCAGAGGCGA AATCGGGTTT CTGA
|
|---|
| Protein sequence | MTEDTPISVT MEKDGEIAVI IVNNPPVNAL SWHVRQGLAD HFKAALADDS VKAIVLRCAG
ATFIAGADIS EFGKPPRGPD FNAVLNSIEV ASKPVVAAIH GTALGGGLET ALVCHYRIAV
PSAKLGVPEV KLGLLPGAGG TQRLPRIVGV EAAATMTSTG DPVPAPKAKE MGLVDELAGE
DSLAADAIAF ARAKIADGPR PTRERPVFGD VAVIERLKAA NAKRWRGFEA PYANLACVEA
ATRLPFDEGL AFEREQFMKL MFGSQSAAQR HIFFAERQAA KIDGLPKDTK LRDVKKVGII
GAGTMGGGIM MNFLQKGIPC TIVEMAQDAL DRGLGVVRKN YDASAAKGRF TPEQVDQMMG
LITPSLSLDD LADCDLIIEA VYENMDVKKD IFGKLDTIAK PGAILASNTS YLDIDEIATA
TNRPGDVLGM HFFSPANVMK LLEVVRGEKT APDALATAMA TGKKIGKVAV VAGVCDGFIG
NRMLKPRQME AMKLLLEGAT PAQVDKVHVD FGMPMGPFQM SDLAGVDIGW HRDPNRIENI
RDALCAEGRW GQKKQAGFYD YDEKRNPSES PRVAEIIEEF RKKAGIEKRE ITDQEIIERT
LYPMVNEGAR ILEEGKAQRA SDIDVVWIYG YGWPVYRGGP MFWAGLEGTD KIVAALEKHG
FEIAPLLKAK AEAKSGF
|
|---|
| |