Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_3041 |
Symbol | |
ID | 4083049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 3188443 |
End bp | 3191238 |
Gene Length | 2796 bp |
Protein Length | 931 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638011427 |
Product | TonB-dependent receptor |
Protein accession | YP_618078 |
Protein GI | 103488517 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000614421 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.287923 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAATTC AAGCAATGCG GAGCGTTCGC ACTTTGACCC GGCTGGCGTG CGGGGCCTCG CTTGCCGTGC TGGCGGCGTC GCCGGTGTGG GCGCAGGATG CTGCTGAAGA GGCGGTCGCC AGCGAAGACG AGATCGTCGT CACCGGCTTT CGCGCCTCGC TCGACGAAGC ACTCAACCAG AAACGCGATT CGATCTCGGC TGTCGACGTC ATCGTGGCGG AGGACATTGC GAAATTCCCG GATCAGAATC TGGCTGAATC GCTGCAACGC ATTCCCGGCA TCTCCATCCA GCGCGACGCT GGCGAAGGCC GCGCGATCAC GGTTCGCGGG CTTGGCGCAC AGTTCACGCG CGTTCGCCTG AACGGCATGG AAACCATCGC GACGTCGACC GACGGCGCCG CGGCGAACCG CGACCGCGCG TTCGATTTCA ACGTCTTTGC CTCCGAACTC TTCACCTCGC TGGTGGTCCA TAAGACCGCC TCGGCCTCGC TCGACGAAGG CTCGCTGGGG GCAGTGGTCG ATCTCAACAC CGGCAATCCG CTGGGCGGCA AGGAAGGGCT GACGCTCGTT GGCTCGGCGC AGGCGCGTTA CAACGACCTC ACCGAAAATG TCGATCCGCG GCTGGCAGGC CTGATCGCCT GGACCGACGC CGATCGCACC TTCGGCGTTT CGGCGTCGGT CGCCTGGTCC GATTATACGA CGGACGAACT GGGCAATAAC AGCGTTCGCT GGGCGCAGGC GCCGTTCCGC AGTGTAGATG GTGTAACTTG CCTTTCGGGC TCCAGTTTCG TCGCAAATCC CTCGGCCGGC TGTATCGAGG TTGCCGAAGC GTTCCACCCG CGCATCCCGC GTTACGGCCT GGTGCGGCAT GAACGCGAAC GGCTGGGTGC GACCGCCTCG ATCCAGTTCG AGCCAAGCGA GAATACGAAG ATTTCGATCG ACGGGCTATA TTCGCGGTTC AAGGAAGTGC GCGACGAATA TTGGGGCGAA GTGCTGTTGC GCAGCGAAGA GCGCGGCATC GATGTGTCCA ACTACACGAT CGATGAAGAC AACAATCTGA TCGCGGCGGA TCTCGATAAT GTGTACATCC GCACCGAACG CTATTCGCGT GAGAGCGAGA CCGAATTCTA CCAATTGTCG GGGCGCCTGG AACAGCGGCT GACCGACACG TTCAAGATCA ATCTGCTTGG CGGTTTTTCG AAGTCGCAGG CCGATATCCC GATCGAAACG ACGCTGGCGT TCGACGACCG GGACGGCACC GGGTATCGCT ATGATTATAC GAACATGAAG TTCCCGGTTC TCAGCTTCGG TCCGGGCATC GAGGATCCTT CGTCGTTCGT GCTCGCCGAA TTCCGCGATC GCCCGTCGTT CCTGACCAAC AAGTTCAAGA CGGTGTCGCT CGATTTCGAC TGGGACGTGG CCGACCGGTT CAAGCTGCTT GGCGGCGGTT TCTATCGTCA GTTCGATTTC GATACGGTCG GCTTCCGCCG CGACAGCACC TATTGTGCCG CCTTCACCTG CGCGCCCGGT ACCACCGGCC TGCCGGTAAC GGCTGACATT GCCGAACTGT TCAAGCTGGG CAAAGCGGGG CAGCCATCGG GCAATACCAA CGCCTGGATC GTGCCAGATC TCGATGCGGG GACGGCGCTG ATCGACCTCT ACAACCGTCC GGCCGTCCTT CAGCAAGGTG AACAGCGCGC AGTCACCGAA AAAACCTATG GCGGCTGGTT TATGACCGAG TTCGAAACCG AACTCGCCGG GATGCGGCTG ACCGGTAATG CCGGCGTGCG CTATGCCAAA ACCGAGCAAT CGTCTTCGGG TTTCACAAGC GGAACATTCG TTACGGTCGA CCGGACCTAT GACGACTGGT TGCCGTCGTT CAACCTGAAC CTGCATCCGA CCGAGAACAT CATTCTGCGC GGGGCGATCG CGAAGGTGAT CACGCGCCCC ACGCTCGGCA ATCTGTCGCC GGGCGGTGCC GTCGATCAGT TTAATTTCCG GATCACCTCG GGTAACCCGT TCCTCGATCC GTTCCGCGCG ACGACTTTCG ATCTGGCCGC CGAATGGTAT TTCGCACCGG GAGCACTCGC TTCGGTGGCT TTGTTCGCCA AGGATATCGA AAGCTTCCCC ATTTCTACTT CACTTCAGGG GACATATGCC GACAGCGGCC TGCCGCTCTC GCTTCTGACG CCGGGAACCC CGGCTTATGA TGCTGTCGTG GGCGGTTCGA ACCCCAACCG GCAGTTCGAG TTCCGTACGA CCGGAAACGG CCCCGGCGCG AGCCTCAAGG GCATGGAATT GTCGCTCCAG CTACCATTCT CTGTGTTCTC GGACTCGTTG CGTCACTTTG GCGTGCTCGG CAATGCGACG TTCGTAAAAA GCAATGTCGA CTACACGATT GCCGGGCCCT TGGCATATGA TCCTGTCGAT AACCGGCTCG AGGCACAGCC AGCGGGCGTC TATACCCAGC CGCTGCTCAA CCTTGCCAAG CGGGCGTGGA ATGCCACCGT CTATTACGAC GACGGCAAAT TCTCGGCGCG TACGTCGGCG GCATGGCGCA GCGGCTATAA TGACGGCACC AGCGGCAACG GCAATGTGTT CGAAGGTTAT GGCAGTTCGT TCAACGTCGA TGCGTCGATC CGTTATGCGA TCACCGAAAA TATCGAACTG TCGATCGAGG GGACGAACCT TACGGACGAT TATCGCTATC GCTTCACCGA CCTCGAAGCG AATCGCAACT ATGAGAACAA CCACTACGGC CGCACCTTCC TGTTCGGTGC GCGCGTCAAG ATCTGA
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Protein sequence | MSIQAMRSVR TLTRLACGAS LAVLAASPVW AQDAAEEAVA SEDEIVVTGF RASLDEALNQ KRDSISAVDV IVAEDIAKFP DQNLAESLQR IPGISIQRDA GEGRAITVRG LGAQFTRVRL NGMETIATST DGAAANRDRA FDFNVFASEL FTSLVVHKTA SASLDEGSLG AVVDLNTGNP LGGKEGLTLV GSAQARYNDL TENVDPRLAG LIAWTDADRT FGVSASVAWS DYTTDELGNN SVRWAQAPFR SVDGVTCLSG SSFVANPSAG CIEVAEAFHP RIPRYGLVRH ERERLGATAS IQFEPSENTK ISIDGLYSRF KEVRDEYWGE VLLRSEERGI DVSNYTIDED NNLIAADLDN VYIRTERYSR ESETEFYQLS GRLEQRLTDT FKINLLGGFS KSQADIPIET TLAFDDRDGT GYRYDYTNMK FPVLSFGPGI EDPSSFVLAE FRDRPSFLTN KFKTVSLDFD WDVADRFKLL GGGFYRQFDF DTVGFRRDST YCAAFTCAPG TTGLPVTADI AELFKLGKAG QPSGNTNAWI VPDLDAGTAL IDLYNRPAVL QQGEQRAVTE KTYGGWFMTE FETELAGMRL TGNAGVRYAK TEQSSSGFTS GTFVTVDRTY DDWLPSFNLN LHPTENIILR GAIAKVITRP TLGNLSPGGA VDQFNFRITS GNPFLDPFRA TTFDLAAEWY FAPGALASVA LFAKDIESFP ISTSLQGTYA DSGLPLSLLT PGTPAYDAVV GGSNPNRQFE FRTTGNGPGA SLKGMELSLQ LPFSVFSDSL RHFGVLGNAT FVKSNVDYTI AGPLAYDPVD NRLEAQPAGV YTQPLLNLAK RAWNATVYYD DGKFSARTSA AWRSGYNDGT SGNGNVFEGY GSSFNVDASI RYAITENIEL SIEGTNLTDD YRYRFTDLEA NRNYENNHYG RTFLFGARVK I
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