| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3040 |
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| Symbol | |
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| ID | 4083048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 3186803 |
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| End bp | 3188182 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638011426 |
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| Product | pectate lyase |
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| Protein accession | YP_618077 |
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| Protein GI | 103488516 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00328566 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.615861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTGCA CTCCATGGAT AGCCGCGCTT TTGCTGGCCC TTGCGCTGCC TTGCGCGCCG
CTCGCCGCCG CCGAAGCGAC GCCGCGCGCC TTCCCCGGCG CGGTCGGTCC GGCGGCCGAA
ACTCCCGGCG GGCGCGGCGG CAAGATCCTG CGCGTGACGA CGCTGGCCGC CGACGGGCCG
GGGTCGCTCA AGGCCGCGAT CGACACGCCG GGACCGCGCA TCATCGTTTT CGAGGTCGGC
GGCGTGATCG ACATGGGGCG CCAGCCCGTT GAGATCAAAC ACCCCTATCT GACGATCGCG
GGGCAAACCG CGCCCGGCCC CGGCATCACG CTGATCCGCA CCGGCATCGA CGTGAAGACA
CACGACGTCA TCCTGCGCCA CCTGCGCGTC TATACCGGCG TCGATGGCCA GCCGAAGCGC
AGCGGGTGGG AGGCCGACGC CCTTTCGACC GTCGCCGCGC ACAATGTCAT CGTCGATCAT
TGCACCTTCC TGTGGGCGAT CGACGAAAAT ATGTCGGCGT CGGGGCCGCG CTTCACCGGC
AATACGGTCG AGGAATGGCG CGCTGGGACA AGCCGCAACA TCACCTTTTC GAACAATCTC
GCCGCCGAGG GTCTTGCCGA TGCGAGCCAC CCCAAGGGCG AGCACAGCAA GGGGTCGCTG
GTCCACGACA ATGCCACCGG CATCGTGTTT TACCGCAATC TCTGGGCGCA TAATGTCGAG
CGCAACCCGC TGGTGAAGGG CGGCGCGCGG GTGCTGATGA TCAACAATCT GATCTACAAC
CCCAAGCACC GCGCGGTGCA TTACAACCTG ATGGACCTTG AGTGGACCGG GCACGACCAT
GTCACGGGCC AGATCACCGC GATCGGCAAT GTCATGCGCG GCGGCAACGA CACCGACGAG
GGTCTGCCCT TTCTGATGCT CGGCGGCGAC GGCGACCTGG AGTTTTATGG AAAGGACAAT
CTGGCGGTCG ACCGCCACGG CAAGGCGCTG CCCGAATTCG GCCGCTATGG CGAAACGCGC
GCCGCGCTGA TCCGCGCCAG GGCGCCGCTC GCGGCCGTCG ATGGCTACCG CATCCTGCCG
GTGCGCGATG TCGAAACGTC GGTGCTGGCG AGCGCGGGCG CGCGCCCGTG GGCGCGCGAT
GCAGAAGAGA TTCGCGTGCT CTTCTTCGTT GCCGAAGGGC GCGGCGCGAT CATCGACGAC
GAAAAGGAAG TGAGCGCCTA TCCGGCGGTC AAGCCGCCAG TGCGCGCGCC CTTTGTCGAA
GGCGACTGGG ATCTGGCGAC GATGGAGCCC CGGTCGGGCC GCTATCCGGG GCAGACCGCC
CCCATGCCGC AGGAACATCT GTCGGCGCGC GACCGCGCCT CGCGCGGCGA AGCGCCATGA
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| Protein sequence | MRCTPWIAAL LLALALPCAP LAAAEATPRA FPGAVGPAAE TPGGRGGKIL RVTTLAADGP
GSLKAAIDTP GPRIIVFEVG GVIDMGRQPV EIKHPYLTIA GQTAPGPGIT LIRTGIDVKT
HDVILRHLRV YTGVDGQPKR SGWEADALST VAAHNVIVDH CTFLWAIDEN MSASGPRFTG
NTVEEWRAGT SRNITFSNNL AAEGLADASH PKGEHSKGSL VHDNATGIVF YRNLWAHNVE
RNPLVKGGAR VLMINNLIYN PKHRAVHYNL MDLEWTGHDH VTGQITAIGN VMRGGNDTDE
GLPFLMLGGD GDLEFYGKDN LAVDRHGKAL PEFGRYGETR AALIRARAPL AAVDGYRILP
VRDVETSVLA SAGARPWARD AEEIRVLFFV AEGRGAIIDD EKEVSAYPAV KPPVRAPFVE
GDWDLATMEP RSGRYPGQTA PMPQEHLSAR DRASRGEAP
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