| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3034 |
|---|
| Symbol | |
|---|
| ID | 4083042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3181350 |
|---|
| End bp | 3182003 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638011420 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_618071 |
|---|
| Protein GI | 103488510 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0698] Ribose 5-phosphate isomerase RpiB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.821163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG CGCTGATCAC CGAGAACAGC CAGGCCGCCA AGAACGGCGT CATCCACGAA
GCGCTGACCG CGGTCGCGGA GCCGCTGGGT CATCAGGTTT TCAATTACGG CATGTATTCG
GCGGACGACA AGGCGTCGCT GACCTATGTG ATGAACGGCC TGCTGGCGGG TATCCTCCTC
AATTCGAAGG CGGCCGACTT CGTGGTGACG GGTTGCGGCA CCGGCATGGG ATCGATGCTC
GCGTGCAACG CGATGCCGGG GGTGTTCTGC GGGCTGGTGA TCGATCCGAC CGACGCCTTT
CTGTTCGGCC AGATCAACGA CGGCAACGCC ATTTCGATGC CCTATGCCAA GGGCTTCGGC
TGGGCAGCCG AGCTTAACCT GCAGGACGTT TACGCCAAGC TGTTCGACGG CGAGCGCGGG
CTGGGCTATC CCAAGGAACG CGCCGAAATC ATGCGGACGA ACCGCGGCAT ACTGAAAGAT
CTGAAGGCGG CGGCGTGCCA CGACATGCTG ACGGTGCTGA AGAATGTCGA CCAGGATCTG
CTGCGCGCGG CGATCGCGGG TGAGAGGTTC GCCGACTATT TCTACGCCAA TTCGCAGGAC
GAAGCGATCA GCGCCTATTT GACGAGCTTG TCTGCGGAGC GGGCGCTCGC CTGA
|
|---|
| Protein sequence | MKIALITENS QAAKNGVIHE ALTAVAEPLG HQVFNYGMYS ADDKASLTYV MNGLLAGILL
NSKAADFVVT GCGTGMGSML ACNAMPGVFC GLVIDPTDAF LFGQINDGNA ISMPYAKGFG
WAAELNLQDV YAKLFDGERG LGYPKERAEI MRTNRGILKD LKAAACHDML TVLKNVDQDL
LRAAIAGERF ADYFYANSQD EAISAYLTSL SAERALA
|
|---|
| |