| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2991 |
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| Symbol | |
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| ID | 4083074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 3132395 |
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| End bp | 3133372 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 638011376 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_618029 |
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| Protein GI | 103488468 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0425792 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCTCC GCGCGCCCGG CGACACCGAC TGGATGGCCG CCGCCGCCGG GCTGGCGCGC
CGCGGTCGCC CGGCGTCGGC GCCCAATCCC AATGTCGGCT GCCTGATCGT CAAGGCGGAC
CAGGTGGTGG CGCGCGGCTG GACGCAAGCC GGCGGTCGCC CGCACGGCGA AGCGGTGGCG
CTGGCGGCGG CCGGGGTCGC CGCGCGCGGC GCGACCGCCT ATGTCACGCT CGAACCCTGC
GTCCATGCCA GCGCGCGCGG CCCGGCGTGC AGCGATTTGC TGATTAGGGC GGGAGTCGCT
CGCGTCGTCG TTGCGGTGCA GGATCCCGAC CCGCGCACCG ACGGCGCGGG CATTGCGCGA
TTGCGCGCGG CGGGGATCGA GGTGACGGTC GACGTCCTCC CCGCCGATGC CCGCGCGGCG
ATGGCGCCCT GGTGGACGCG GCAGACCATG GGGCGTCCAT TTGTGACGCT CAAGCTCGCG
ACCTCGCTCG ACGGCCGTAT CGCACCGGCC GACGGATCGA GCCGCTGGAT CACCGGCGAC
CGCGCGCGCG CGCACGGCCA TCTCGAACGC GCCAGCCACG AGGCGATCCT CGTCGGGCGC
GGGACGTTCG AGGCCGATGC ACCGCGGCTC GACGTGCGCT TGCCGGGGCT CGAAGATCGC
AGCCCGAAGA AATTTGTCCT CACGCGCGGC GCGGCGCCCG AGGGCTGGAC CGCCGTTGCC
TCGCCCGATG CCATCGAAGG CGTCGATTCG CTGCTCGTCG AAGGGGGCGC AGGCGCGGCG
GCCGCCTTCC TTGCCGCCGA CCGCGTCGAC CGACTGCTCC TGTACCGCGC GCCGATCCTG
ATCGGCGACG GCAAGGCGGC GCTCGGCGAC ATCGGCCTGA CCAGAATCGC CGCCGCGCAC
GGCCGCTGGC GCCTTGCCGA CAGCCGGATG CTTGGCAGCG ACCGGCTCGA CGTCTACGAG
CGCGTCAGGA CAATTTGA
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| Protein sequence | MALRAPGDTD WMAAAAGLAR RGRPASAPNP NVGCLIVKAD QVVARGWTQA GGRPHGEAVA
LAAAGVAARG ATAYVTLEPC VHASARGPAC SDLLIRAGVA RVVVAVQDPD PRTDGAGIAR
LRAAGIEVTV DVLPADARAA MAPWWTRQTM GRPFVTLKLA TSLDGRIAPA DGSSRWITGD
RARAHGHLER ASHEAILVGR GTFEADAPRL DVRLPGLEDR SPKKFVLTRG AAPEGWTAVA
SPDAIEGVDS LLVEGGAGAA AAFLAADRVD RLLLYRAPIL IGDGKAALGD IGLTRIAAAH
GRWRLADSRM LGSDRLDVYE RVRTI
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