| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2966 |
|---|
| Symbol | |
|---|
| ID | 4081082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3110038 |
|---|
| End bp | 3111348 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638011351 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_618004 |
|---|
| Protein GI | 103488443 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.436518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0431026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCTACC CCACCCGCCG CGCCATCTAT CTGCTGCTCG CGGGTGCGCC GCTGGCGCTG
GTGCTCGGAC TGGTCCGGCC CGAGCTGTGG CTGGTCGCGC CCGGCTGGAT CGGGGCGATC
CTCGCCTGCC TGATCCTCGA CACGCTGTCG GGGGCCAATC CGCGCCACCT GACGCTCGAC
GCGCGCTATC CGGCGCAGGT CGGCGTCGGC GACCCCTTCG ACCTGTCGCT CGCCGCGCGT
GGCCGCACCC TGCCGCCGCG CGCCGGGATC GCGCTGTCGC TCGACGAGCG GCTGGCCGTG
GGCGGACGGC TGGCGGGTGA GATGCGCCGC ACCGAGGGCG CGCTCGTCGG CACGCTGTCG
CTCGCCGCGA CGCGGCGCGG GCAGGCGGAG GTCACGGCGC TGTGGGTGCG CTGGGCGGGG
CCGCTCGGGC TGGTGTGGAA ACAGCGCCGG TTCACGATGG GCGGCGCGAT CACCGTCGTG
CCCAGCCTGC GCGCGGTGAC CGACGCGGGG CGCCGTCTCT TCCAGCGGAA CAACTGGTTC
GGGCTCCGCC AGCAGCGCTT CCGCGGTGAA GGCAGCGAGT TCGAGGCGCT CGCCGAATAT
CAGCCGGGGA TGGATCGCCG CGCGATCGAC TGGAACGCCT CGGCGCGCCA CGTCAAGCTG
CTCGCCAAGG AATATCGTGT CGAGCGCGAC AATCGCGTCA TACTCGCGAT CGATGCGGGG
CGCACGATGG CCGAACCCGT CGGCGGGATG CCGCGCGTCG ACCGGGCCGT GTCGGCGGCG
CTGCTCCTCG CCTATGTCGG CCTGAAACTC AATGACCGGA TCAGCCTCTT TTCCTTCGCC
GCCAGACCGC AGGCGCTGAC CCCCGCCTAT CTGCACGTGC AGGATTTCCC GGCGTTGCAG
CGCGCGGCGA GCCGCGTCGA CTATGCGCCG GTCGAAAGCA ATTTCACGCT CGCGCTCACC
ACCTTGAGCG CGCAGCTCAA CCGCCGCTCG CTGATTATCC TCTTCACCGA ATTTGCCGAC
GCGACGAGCG CCGACCTGAT GATTCGTGCG GCGGGGCGGC TGGCGAAAAA GCACCGGCTG
CTCTTCGTCG TCATGCGCGA CGAAGAGGTC GAGGCGGAGG AGCGGCGCCA TCCCGAAAGC
GCCGCCGACG TCACGCGCGC AAACGTCGCG GCGGCGATGC TCGCCGATCG CCAGCTGGTG
ATTGCGCGGC TCCGGCGGCT CGGCGCCGAC GTGATCGAGG TGCCCGCCGA TGACATGGCG
GCGCGCGCGG TCGAGGCCTA TCTGGGCATC AAGCGGCAGG GCAGCCTGTG A
|
|---|
| Protein sequence | MIYPTRRAIY LLLAGAPLAL VLGLVRPELW LVAPGWIGAI LACLILDTLS GANPRHLTLD
ARYPAQVGVG DPFDLSLAAR GRTLPPRAGI ALSLDERLAV GGRLAGEMRR TEGALVGTLS
LAATRRGQAE VTALWVRWAG PLGLVWKQRR FTMGGAITVV PSLRAVTDAG RRLFQRNNWF
GLRQQRFRGE GSEFEALAEY QPGMDRRAID WNASARHVKL LAKEYRVERD NRVILAIDAG
RTMAEPVGGM PRVDRAVSAA LLLAYVGLKL NDRISLFSFA ARPQALTPAY LHVQDFPALQ
RAASRVDYAP VESNFTLALT TLSAQLNRRS LIILFTEFAD ATSADLMIRA AGRLAKKHRL
LFVVMRDEEV EAEERRHPES AADVTRANVA AAMLADRQLV IARLRRLGAD VIEVPADDMA
ARAVEAYLGI KRQGSL
|
|---|
| |