| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2943 |
|---|
| Symbol | nadE |
|---|
| ID | 4080985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3086293 |
|---|
| End bp | 3087963 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638011328 |
|---|
| Product | NAD synthetase |
|---|
| Protein accession | YP_617981 |
|---|
| Protein GI | 103488420 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0171] NAD synthase
[COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | [TIGR00552] NAD+ synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CCGCTGCAAC GCTGACCATC GTGCTTTCCC AGATGACCCA GGCGGTCGGC
GACCTCGCCG CCAATGCCGA TGCGATGCGC AGCGTTCGCG CGCGGCACCG CGATGCCGAC
CTGATCCTTT ATCCCGAGCT GCAATTGATT GGCTATCCGC CCGAGGATCT GGTGCTGAAA
CCCGCGCTGG CGGAGCGCGC CGCAACGCTG CTCGCCGAAC TGGCCGCCGA CACCGCCGAT
GGCGGCCCGG CGATGCTGGT GGGATCGGTC GAGCGCGACG CTGACGGCAG CCTCTATAAT
ATCGTCGCGC TGCTCGACGG CGGGCGGGTG GTCGCGGTGC GGCGCAAGCA TGAACTGCCC
AATTACGGCA CCTTCGACGA AAAGCGCGTC TTCGCACCCG GCCCGCTGCC CGACATCGTC
GAATGGCGCG GGGTGAAGCT GGGCCTGCCG ATCTGCGAGG ATGGCTGGCT GCCGAAGGTG
AGCGCGCATC TCGCCGCGCA GGGCGCCGAA CTGCTGATCT CGGTCAACGG CAGTCCCTAT
GAAATCGACA AGGACGAGCG GCGGCTCTCG CAGGTGTTCG CGCGCCGCGT CGCCGAAACC
GGATTGCCGC TGATCTTTCT CAACCGCATC GGCGGACAGG ACGAGCTGGT GTTCGATGGC
TGCTCCTTCG TGCTGAACGG CGACGGCACC GCCGCGCACC GCCTGACCGA CTGGGAAGCG
GAGGAGCGGG TGACGCGCTG GACGAAGGGC GCGGCGGGTT GGGCCTGCGA CGCGGGGGCG
ATCGCCGAAT GGGAGGCGCA CCCCGCCGAC ATCTACAGCG CGATGATCCT CAGCTTGCGC
GACTATGTGA CACGCAACCG CTTCCCCGGC GTCGTGCTCG GCCTGTCGGG CGGGATCGAT
TCGGCGATCT GCGCGGCGAT CGCCGCCGAC GCGCTGGGCC CCGACAAGGT CTGGTGCGTG
ATGCTGCCGA GCCGCTTCAC CAGCCAGGCA AGCCTCGATG ACGCGGCTGG CTGCGCGCGG
ATGATCGGAT GCCGGCTCGA CACGATTCCC ATCGTGCCCG CCGTGGAGGC CTTCGATCAG
ATGCTCGCGG GCAGCTTTGC CGATGCCGAG GTCGACATCA CCGAGGAAAA TGTCCAGTCG
CGCATCCGCG GCGTGACGTT GATGGCGCTC AGCAACAAGT TCGGCCCGAT GCTGCTGACG
ACGGGCAACA AGAGCGAGAT GAGCGTCGGC TATGCGACCA TCTATGGCGA CATGGCGGGC
GGCTATAATC CGCTGAAGGA CGCATACAAG ATGACGGTCT TTGCGCTCGC GAAATGGCGC
AATGAACATG TGCCGCGGCT GTCGCGCAAC CCGGTTGCCC CCGTGATGCC CGATACGATC
ATCACCAAGC CGCCGAGCGC CGAGCTGCGC CCCGACCAGA AGGATCAGGA CAGCCTGCCG
CCCTATGAGG ATCTCGACCG GATGCTCCAT ATGCTCGTCG AGGAGGAAGC GGGCGTTGAC
GATGTCGTGG CGCGCCACGG CTTCGACCGC GACGCGGTGG CGCGGATCGA ACGGCTGCTC
GCCATCGCCG AGTACAAGCG CCGCCAGGCG CCGCCGGGGG TCAAATTATC GACGCGCAAC
TTCGGTCGCG ACCGGCGCTA TCCGATCACG CACGGGTTCC GGACGGGATA G
|
|---|
| Protein sequence | MTDAAATLTI VLSQMTQAVG DLAANADAMR SVRARHRDAD LILYPELQLI GYPPEDLVLK
PALAERAATL LAELAADTAD GGPAMLVGSV ERDADGSLYN IVALLDGGRV VAVRRKHELP
NYGTFDEKRV FAPGPLPDIV EWRGVKLGLP ICEDGWLPKV SAHLAAQGAE LLISVNGSPY
EIDKDERRLS QVFARRVAET GLPLIFLNRI GGQDELVFDG CSFVLNGDGT AAHRLTDWEA
EERVTRWTKG AAGWACDAGA IAEWEAHPAD IYSAMILSLR DYVTRNRFPG VVLGLSGGID
SAICAAIAAD ALGPDKVWCV MLPSRFTSQA SLDDAAGCAR MIGCRLDTIP IVPAVEAFDQ
MLAGSFADAE VDITEENVQS RIRGVTLMAL SNKFGPMLLT TGNKSEMSVG YATIYGDMAG
GYNPLKDAYK MTVFALAKWR NEHVPRLSRN PVAPVMPDTI ITKPPSAELR PDQKDQDSLP
PYEDLDRMLH MLVEEEAGVD DVVARHGFDR DAVARIERLL AIAEYKRRQA PPGVKLSTRN
FGRDRRYPIT HGFRTG
|
|---|
| |