Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2882 |
Symbol | |
ID | 4080675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 3032827 |
End bp | 3035187 |
Gene Length | 2361 bp |
Protein Length | 786 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638011266 |
Product | TonB-dependent receptor |
Protein accession | YP_617920 |
Protein GI | 103488359 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCCTT TCGCTCGCAC GCTGCGCCGC GCCATCCTTG CCACCAGCAC GCTTTCGGTG CTCGCCTTCG CTCCTGCCGC CATCGCGCAG GACGCTGGCG TCGAACCCGC CGGTGCCAGC GAGGATAGCG GCGACAATGA AATCATCGTC ACCGCGCGCC GTCGCGACGA GCGGCTGATC GACGTGCCGG TCGCGATCAC CGCCTATTCG GGTGACGCGC TGGCCAAGGC GGGCGCGATC GACATCACCG ACATCGGCGC GACGACGCCG AACACGACGC TGGAGGCGTC GCGCGGCACC AATTCGACGC TCAGCGCCTT CATCCGCGGC GTCGGGCAGC AGGATCCGGT TTCGGGCTTC GAACAGGGCG TCGGCATCTA TCTCGACGAT GTATACCTCA ACCGCCCGCA GGCCGCGGTG CTCGACATTT ACGAGGTCGA GCGGATCGAG GTGCTGCGCG GGCCGCAGGG CACGCTTTAT GGCCGCAACA CGATCGGCGG CGCGGTCAAA TATGTGACCA AGCCGCTGCC GCAGGAGTTT TCGCTGAGGA TCAAGGGCAC CTATGGCAGC TATGACCAGG CCGACCTGGT GGTCAGCGCC AGCGCGCCGG TCAGCGACCT GCTCCGCGTC GGCGTCGCGG GGGCGCGGCT GTCGCGCGGC GGGTTCGGCG ACAATCTGAC CAACGGGCTC GAAAACTACA ACAAGGACGT CTGGGCCGGG CGCGGCACGG TCGAGCTTGG CGGCTATGGC GAGCCGGTGC TCATCCGCAT TTCGGGCGAT TATACCAAGG ACAAGAGCGC GCCGCGCGGC GGCCACCGCC TGATCCCCAG CCTCGCGACG GGCGCCCCCG TCCTCGACAA TGTCTTCGAC ACCCGCGGCG GCCTGAACGA CCCCAAACAG GAGATCGAGG CCTATGGCCT CGCCATGAAC GTATCCGCCG AGCTCAGCGA CACGGTGACG CTGCGGTCGA TCAGCGCGTG GCGCAAGGAC AAGTCGGCGA CCCCGATCGA TTTCGACGCG CTGCCCGCGG TCGACGTCGA TGTCCCCGGC TTTTATTTCA ACGAACAGAT CAGCCAGGAA CTCCAGCTGC TTTATGAGGG CGATCGCCTG AAGGGCCTGC TCGGCTTCTA TTATCTCGAC GCGACCGCCG ACACCTTGTT CGACGTCCGC ATCTTCAACA CCTTTGCCGG GCTGACCGCC TTTACCGAGG CCGATGTCGA TACCACGACC TTCGCCGTCT TCGGCGATTT CACCTATGAT TTCAGCGATC AGTTCAGCCT GTCGGTCGGC GGCCGCTACA CCTGGGACAA GCGCACCGCG TCGATCCTGC GCCAGAATTA TCTCGGCGGC GGATCGCCCG TCTTCGGCGG CGCGGGCGTG CCCTTCGGCG CACCCAGCAC CAATTTCGAC GGCAGCCGCA AGTTCAACAA GTTCACCCCG CGCGTCTCGC TCCAATATCA GCCGACGAGC GACCATAATT TCTACGCCAG CTATTCGCAG GGGTTCAAGG GCGGCGGCTT CGATCCGCGC GGCGTCGGCG TCAACGCACC GGCCGCCATT CCGGGCAGCC CGACCGATGC CGAGGTCGCG TCCTTCCTGA GCTTCCTTCC CGAACAGGTC GACAGCTATG AAGTCGGCTA CAAGGGCAGC CTGATGGACG GCGCGGTCAA CGTCGCGCTC GCGGCCTTCT ACGCCGATTA TTCGGACGTC CAGATTCCGG GTTCGGTTGC CTGCACCGTC GGCGGCCTGC CGACTTTCTG CGGCGTCGTC TCGAACGCGG GCAAGGCGAC TTTCAAGGGG CTGGAGTTCG AAGGCCGCGC GCGCCTTGCC GAAGATATGG CGGCGGCCGG CGATCGGCTG ACGCTGTCGA CCGCGCTGGG CTATATCGAC GCGCAATATA AGGAATATGT CACCAACATC GGCGGCGTAC CCACCGATGT CGCCGATTTC CGCGAGGTGC AGAACACGCC GAAATGGACC GCCAGCGGCA CGCTCGCCTA TTCGACCCCG GTCGGCGACG GCGAGATCCG CTTCGGCACG ACGCTGTCCT ATCGCAGCAA GACCCACCAG TTCGAAATCC CGAACCCCTA TATCGACCAG AAGGGGTTTG CGCTGTGGGA TGCGAGCCTG GTCTATACCG CGCCCGACGA TCGCTGGAGC CTCGGGCTGT TCGGCAAGAA TCTGACGAAC AAGAAGTACA AGACCTCGGG CTATACCTTC ATCGTCGTCG ATCCCGTAAC GGGCGTCCCG GCCCTCGGCG CCAACGGCCT GCCGCGCTCG GCACTCGGCA CCGAGGGCAC GCTCACCGCC TTCTACGGCA ACCCGCGGCA GGTTTTCGTC ACGGGCACGG TCAAGTTCTG A
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Protein sequence | MRPFARTLRR AILATSTLSV LAFAPAAIAQ DAGVEPAGAS EDSGDNEIIV TARRRDERLI DVPVAITAYS GDALAKAGAI DITDIGATTP NTTLEASRGT NSTLSAFIRG VGQQDPVSGF EQGVGIYLDD VYLNRPQAAV LDIYEVERIE VLRGPQGTLY GRNTIGGAVK YVTKPLPQEF SLRIKGTYGS YDQADLVVSA SAPVSDLLRV GVAGARLSRG GFGDNLTNGL ENYNKDVWAG RGTVELGGYG EPVLIRISGD YTKDKSAPRG GHRLIPSLAT GAPVLDNVFD TRGGLNDPKQ EIEAYGLAMN VSAELSDTVT LRSISAWRKD KSATPIDFDA LPAVDVDVPG FYFNEQISQE LQLLYEGDRL KGLLGFYYLD ATADTLFDVR IFNTFAGLTA FTEADVDTTT FAVFGDFTYD FSDQFSLSVG GRYTWDKRTA SILRQNYLGG GSPVFGGAGV PFGAPSTNFD GSRKFNKFTP RVSLQYQPTS DHNFYASYSQ GFKGGGFDPR GVGVNAPAAI PGSPTDAEVA SFLSFLPEQV DSYEVGYKGS LMDGAVNVAL AAFYADYSDV QIPGSVACTV GGLPTFCGVV SNAGKATFKG LEFEGRARLA EDMAAAGDRL TLSTALGYID AQYKEYVTNI GGVPTDVADF REVQNTPKWT ASGTLAYSTP VGDGEIRFGT TLSYRSKTHQ FEIPNPYIDQ KGFALWDASL VYTAPDDRWS LGLFGKNLTN KKYKTSGYTF IVVDPVTGVP ALGANGLPRS ALGTEGTLTA FYGNPRQVFV TGTVKF
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