| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2853 |
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| Symbol | trmE |
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| ID | 4080646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 3001746 |
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| End bp | 3003005 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638011237 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_617891 |
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| Protein GI | 103488330 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0789426 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCATCA GCGGCATCGA TGCCGCCAAG GCTTTACAGG CACTGGCGGG GCGCCTCCCC
ACACCCCGCC GCGCATCGCT CGCCCGGTTG ACGGACACCG ACGGCGGGGC GCTCGATCAT
GCGCTCATCC TCTGGTTTCC GGGGCCAGCG ACCGCGACCG GCGAAGACCT CGCCGAACTG
CACCTGCACG GCGGACGCGC GGTGGTTGCG GCGGTCGAAG CGGCGCTGGC GGCGATGCCG
GGACTGCGGC GTGCCGAAGC GGGTGAGTTT ACGCGGCGGG CGTTTGCGAA TGGGCGGATC
GATCTGGCCG AGGCCGAGGG GCTCGCCGAC CTGCTCGCCG CCGAAACCGA GAGCCAGCGT
GTGCAGGCGC TGGATCATGC GAGCGGGCAT GTGTCGCGCG CGGTGGCGGG GTGGCAGGCG
CGGCTACTCG CGCTGATGGC GGCGGCCGAG GCCGAACTTA ACTTCGCGGA TGAGGATGAC
GTCGAAGTTG GCGAAGGTGT CGCGCAGCGC GTGTCGGAGG GGATGGCGGC CCTGGCGGGG
GAGCTCGGCG AGTGGCTGGC GCGGCCGGCG GCGGAGGTGA TTGCCGAGGG GCTGTCGGTG
GTGATCGCTG GGCCGCCGAA CGCAGGTAAA TCTACTCTTA TCAATGCTCT AGCTCAGAGG
GAGCTGGCGA TCGTGTCGCC GGTCGCCGGG ACGACGCGCG ATGTGATCGA AACGCCGCTC
GCGCTGGACG GAATTGCAAT GCGCTTTTCG GATACTGCCG GCCTGCGCGG CGAAAGTGCC
GACGCGATCG AAATGATTGG AATCGATCGC GCGAAGGCGG CAGTGGAGGG TGCGGACATC
CTGTTGTGGT TGGGCGCGCC GAAGGAGGCG CCCGAGCATC CTCGCACGAT CCTGATCGCC
GCGCAGGCCG ACCGCTGGCG CGGCGATGCC GCGGCCGAAG CCGAGGCCGC GCACTGCGAT
CTTATATTGT CCGCCGCCAC GGGGGAGGGG ATGGACCGGT TGCACACGAT GATCGTCGAG
ATGGCGCGAA CCTTATTGCC GCGCGAGGGC GAGGCTACGC TCCGGCAGCG ACAGCGTGAT
GCGCTCGCCG AGGCAAAGGG GTGGCTGGAA GTTGAGACGG GATCGCGCGA GGCGGGCGAT
CTGATCCTGC TGGCCGAGCG GCTGCGGCTT GCCGGGGCCA CGCTGGACCG TATCACCGGG
CGCGGGGGCG TTGAAGATAT GCTCGACACG CTGTTTGGGC GATTCTGCAT CGGCAAATGA
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| Protein sequence | MRISGIDAAK ALQALAGRLP TPRRASLARL TDTDGGALDH ALILWFPGPA TATGEDLAEL
HLHGGRAVVA AVEAALAAMP GLRRAEAGEF TRRAFANGRI DLAEAEGLAD LLAAETESQR
VQALDHASGH VSRAVAGWQA RLLALMAAAE AELNFADEDD VEVGEGVAQR VSEGMAALAG
ELGEWLARPA AEVIAEGLSV VIAGPPNAGK STLINALAQR ELAIVSPVAG TTRDVIETPL
ALDGIAMRFS DTAGLRGESA DAIEMIGIDR AKAAVEGADI LLWLGAPKEA PEHPRTILIA
AQADRWRGDA AAEAEAAHCD LILSAATGEG MDRLHTMIVE MARTLLPREG EATLRQRQRD
ALAEAKGWLE VETGSREAGD LILLAERLRL AGATLDRITG RGGVEDMLDT LFGRFCIGK
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