| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2828 |
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| Symbol | dapD |
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| ID | 4080409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2984308 |
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| End bp | 2985150 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638011212 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_617866 |
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| Protein GI | 103488305 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.840856 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0227148 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCG ACCTTCAAGC CACGATCGAA GCCGCATGGG ACGCGCGCGA CACATTGGGC
CTCGCCACGA CCGGTGCGGT GCGCGAGGCG GTCGATACCG CGATCGCCGG ACTCGACGAT
GGCAGCTTTC GTGTCGCAGA GCGCGATGCG CGCGGTACGT GGCAGGTCAA CCAGTGGCTC
AAAAAGGCGG TGCTGCTGTC GTTCCGCCTC AATGACATGG AGATCATCGA GGGCGGCGCC
GACGGCGCGA CCTGGTGGGA CAAGGTGCCT TCGAAATTCG CCGGCTGGGG CGAGAATCGT
TTCCGCGACG CCGGCTTTCG CGCCGTCCCC GGTTCGATCG TCCGCCGCGG CGCCTTCATC
AGCAAGGGCG CGGTGCTGAT GCCGAGTTTC GTGAATATCG GCGCTTATGT CGGCGAGGGG
TCGATGGTCG ACGCCTGGGC GACCGTGGGC AGCTGCGCGC AGATCGGCGC GAACGTCCAT
CTGTCGGGCG GCGCGGGAAT CGGCGGCGTA TTGGAACCGC TGCAGGCCGG GCCGGTGGTG
ATCGAGGACG GCGCCTTCAT CGGCGCGCGC GCCGAGGTCG CCGAGGGCGT GATCGTGCGC
GAGGGTGCGG TGCTGTCGAT GGGCGTCTAT CTCGGCGCAT CGACCAAGAT CATCGACCGC
GCGACGGGCG AGGTCTTCGT CGGCGAGGTT CCCGCTTACT CGGTCGTCGT GCCGGGATCG
CTGCCCGGCA AGCCGCTACC CGACGGCACG CCCGGCCCGT CGCTTTACTG TGCGGTGATC
GTCAAGCGCG TCGACGCGCA GACGCGCGCC AAGACGGGAA TCAACGAGCT GCTGCGCGAT
TGA
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| Protein sequence | MTADLQATIE AAWDARDTLG LATTGAVREA VDTAIAGLDD GSFRVAERDA RGTWQVNQWL
KKAVLLSFRL NDMEIIEGGA DGATWWDKVP SKFAGWGENR FRDAGFRAVP GSIVRRGAFI
SKGAVLMPSF VNIGAYVGEG SMVDAWATVG SCAQIGANVH LSGGAGIGGV LEPLQAGPVV
IEDGAFIGAR AEVAEGVIVR EGAVLSMGVY LGASTKIIDR ATGEVFVGEV PAYSVVVPGS
LPGKPLPDGT PGPSLYCAVI VKRVDAQTRA KTGINELLRD
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