| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2815 |
|---|
| Symbol | rplB |
|---|
| ID | 4080396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2970324 |
|---|
| End bp | 2971160 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638011199 |
|---|
| Product | 50S ribosomal protein L2 |
|---|
| Protein accession | YP_617853 |
|---|
| Protein GI | 103488292 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0090] Ribosomal protein L2 |
|---|
| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.477285 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTCA AATCCTATAA TCCGACGAGC CCCGGACAGC GCGGCCTGAT CCTCGTCGAC
AAGTCGGCGC TGTGGAAGGG CAAGCCCGTC AAGGCGCTGA CCGAAGGCAA GCGCAAGACC
GGGGGTCGCA ACAACAAGGG GCATGTGACC TCGCGCGGCA TCGCCGGCGG CCACAAGCAG
AAGTACCGCT TTATCGACTT CAAACGTCGC AAGTGGGACG TGCCGGCGAC CGTCGAACGG
CTGGAATATG ACCCCAACCG CACGGCGTTC ATCGCCCTCG TCAAATATGA GGACGGCGAA
CTCGCCTATA TCCTGGCGCC GCAGCGCCTG GCGGTCGGCG ACACGATCGT CGCGGGCAAG
AAAACCGACG TGAAGCCTGG CAATGCGATG GAACTCGCGC AGATGCCGGT CGGCACGATC
GTCCACAATA TCGAGATGAA GCCGGGCAAG GGCGGCCAGA TCGCCCGTTC GGCCGGCACC
TATGCGCAGG TCGTCGGTCG TGACCGCGGC CTTGTCATCG TGCGTCTCGG TTCGGGCGAA
CAGCGGTACA TCCGCGGCGA GTGCATGGGC ACGGTCGGCG CGGTGTCGAA CCCCGACAAC
CAGAACACCA ATCTGGGCAA GGCCGGCCGC AACCGCTGGC TCGGCAAGCG CCCGCTGACG
CGCGGTGTCG CCAAGAACCC GGTCGATCAC CCGCACGGCG GTGGCGAAGG CCGCACCTCG
GGCGGTCGTC ATCCGGTCAC CCCGTGGGGC AAGCCGACCA AGGGCGCCCG GACCCGTCAC
AACAAGTCGA CCGACAAGAT GATCATCCGG TCGCGTCACG CGAAGAAGAA GAGGTAA
|
|---|
| Protein sequence | MALKSYNPTS PGQRGLILVD KSALWKGKPV KALTEGKRKT GGRNNKGHVT SRGIAGGHKQ
KYRFIDFKRR KWDVPATVER LEYDPNRTAF IALVKYEDGE LAYILAPQRL AVGDTIVAGK
KTDVKPGNAM ELAQMPVGTI VHNIEMKPGK GGQIARSAGT YAQVVGRDRG LVIVRLGSGE
QRYIRGECMG TVGAVSNPDN QNTNLGKAGR NRWLGKRPLT RGVAKNPVDH PHGGGEGRTS
GGRHPVTPWG KPTKGARTRH NKSTDKMIIR SRHAKKKR
|
|---|
| |