| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2730 |
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| Symbol | dapF |
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| ID | 4082469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2876673 |
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| End bp | 2877479 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638011113 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_617768 |
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| Protein GI | 103488207 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0948067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATC GCTTCACCAA GATGCATGGG CTTGGCAACG ACTTCGTCGT GATCGACGCG
CGCGTGGCGC CGGTCGAGAT GACGCCGGCG CGCGCGCATG CGATCGCCGA CCGGCGCCAC
GGCATCGGGT GCGATCAGCT GATCCTGCTC GAACCCTCGA CCAGCGCGGA CGTGAAGATG
CGCATCTTCA ACGCCGATGG GGGCGAGGTC GAGGCGTGCG GCAATGCGAC GCGCTGTGTC
GCGACGCTGA TCGGCAAGCC CGCGGTGATC GAGACGCTGG CGGGGATGCT GCGCGTCACC
CCCGCCGACG GCGGCGCCGA GGTCACGCTG GGTGAACCCG TCTTCGACTG GGACCATATC
CCGCTCGCGA TGCCGATGGA CACGCGCGAC ATGCCTGTCG CGTGGGACGA GCTGGAACAT
GGCGCCGCGG TCAATGTCGG TAATCCGCAC ATCGTCTTTT TCGTGCCGGA AGCCGATGCG
GTTGCGCTCG ATCAACTGGG TCCGCGGATC GAGACCGACC CGCTGTTCCC CGAGCGCGTC
AATGTCAACG TCGCGAGCCT CGACGGCGAG AATCAGCTGC AATTGCGCGT CTGGGAACGC
GGTGTGGGGC TCACGCAGGC GTGCGGCACC GGCGCCTGCG CCACTGCGGT CGCCGCGATC
CGTGCCGGAC TGGTGCGGTC GCCGGTGACC GTCGCGCTGC CCGGCGGTGA TCTGGTCATC
CGCTGGGCAC CCGGCGAACC CATCGTGATG AGCGGCGCCG CGACACGCGT GTTCGACGGC
GAAACCGACT GGGCACAGTT CGGATGA
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| Protein sequence | MADRFTKMHG LGNDFVVIDA RVAPVEMTPA RAHAIADRRH GIGCDQLILL EPSTSADVKM
RIFNADGGEV EACGNATRCV ATLIGKPAVI ETLAGMLRVT PADGGAEVTL GEPVFDWDHI
PLAMPMDTRD MPVAWDELEH GAAVNVGNPH IVFFVPEADA VALDQLGPRI ETDPLFPERV
NVNVASLDGE NQLQLRVWER GVGLTQACGT GACATAVAAI RAGLVRSPVT VALPGGDLVI
RWAPGEPIVM SGAATRVFDG ETDWAQFG
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