| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2710 |
|---|
| Symbol | |
|---|
| ID | 4082411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2856261 |
|---|
| End bp | 2857820 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638011093 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_617748 |
|---|
| Protein GI | 103488187 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5316] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.305499 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGCC GCTGGCCGCT CCTGCTCACG ATGCTCGCCG CATCTCCGGC GGCGTCGCAA
CCCATCGTCA CCTCGCTCGC GCCCGACACG GTATCGGTCA GCGTGTTCCG CGATCCCGAC
CGCGACGAGG GCGGCGAGAT TGCGCCGAAC TGGCTGGAAG GCTTTGCGCT CATCTCCGAA
ACGCGCAGCG TCGACCTGCC CGCTGGCGAA GCGACGTTGC GATTCGAGGG GGTCGCCGAA
GGAATGATTG CGGTATCGGC GATCGTCACC GGCCTGCCCG GCGGCGTGGT GCAGAAGAAT
CGCGACGCGG CGCTGCTGTC GCCCGCGAGC CTGCTCGACG GCTCGCTCGG CAACCGCGTC
CACCTCCGCC GCACCGACCG TGCGACCGGA AAGGTGACCG AAGAGGAGGC GATCATCCGC
TCGGGCCCAG CGGGCGCCGT CGTGCTGCAA ACCGCCGCGG GCTATGAAGC GCTGCGCTGC
ACGGGGCTTC CCGAAACGAT CCTTTACGAT GGCGTGCCGC CGGGGCTGAC CGCCAAACCG
ACCTTGTCGG TGACGACGCG CAGCCCCGCG GCGGCGCGCG CGATGGTGAC GCTGACCTAT
TTGTCGACCG GCTTCGACTG GGCGAGCAAC TATGTCGCGC GTGTGCGCGA CGATGGCAAG
ACGCTCGACC TTTTCGCATG GCTGACCGTT GCCAACAGCA ATGGCGAGAG CTTTGCCGAT
GCACGGCTCG CGGCGATCGC GGGCACGCTC AACCAGGTGA GCGATTTCGA GGAACTGGCA
GACCGTCCGC GCACACCGCC GCTTCGCCTC AGCTGCTTTC CGACCGGCAG CGGGCGTTAT
GGCGTCCCGC GCTCACCACC ACCCCCGCCA GCGCCGCCGA TGATGATGTC CAGTGCAGGA
ATGGAGGATA TTGTCGTCAC CGGATCGCGA ATGCAGCGCG CCGAAATGAT GTCGCCGCTC
GCGATCGTCG CGAGCCAGGA GGATCTCGGT GACCTCAAGC TCTATCGCGT GCCGATCCCC
GTCACCGTCG CCGCGAACGG GCAGAAACAG GTGGCGCTGC TCGTCAAGGA TCGCGTGCCC
TTCCGCACCA TCTACCGGCT GCGCATGGGA CTGGGCGATG AAGGCCGGGC GATGACGCCC
GATATCCTGC TGCGGATGGA GAACAGCGAA GCGGGCGGGC TTGGCATGCC GCTGCCGGGC
GGGCAGGCTG CGGTGTTCGA GCGCGTCGGC GACCGGGACC TGCTCGTCGG CGAGGGCACG
ATGCGCGACC ACGCGGTCGG CGAAAAGGTC GACCTTGTGA TCGGTGAGAG CAGCCAGGTG
CGAATCGATG TCGAAAATCA TGTCCCGCCG AAGAATCGCG AGCATGATTA CCGCGTGACC
GTGATCAATG CGAAGCCGCG CCCGGCCGAT GTCGAGATCG GCTTTCTGGT CGACGACCAT
GAAGGGCTCG ATTCGCGCAT CCGGAAACTG CCGCGCCGCG ACGGCCTGCT AACTTGGATC
GTCCGCGTTC CGGCGAACGG CAGCAAGACG TTTCGCTATC GGGCGAAGGC GGAGGATTAA
|
|---|
| Protein sequence | MMRRWPLLLT MLAASPAASQ PIVTSLAPDT VSVSVFRDPD RDEGGEIAPN WLEGFALISE
TRSVDLPAGE ATLRFEGVAE GMIAVSAIVT GLPGGVVQKN RDAALLSPAS LLDGSLGNRV
HLRRTDRATG KVTEEEAIIR SGPAGAVVLQ TAAGYEALRC TGLPETILYD GVPPGLTAKP
TLSVTTRSPA AARAMVTLTY LSTGFDWASN YVARVRDDGK TLDLFAWLTV ANSNGESFAD
ARLAAIAGTL NQVSDFEELA DRPRTPPLRL SCFPTGSGRY GVPRSPPPPP APPMMMSSAG
MEDIVVTGSR MQRAEMMSPL AIVASQEDLG DLKLYRVPIP VTVAANGQKQ VALLVKDRVP
FRTIYRLRMG LGDEGRAMTP DILLRMENSE AGGLGMPLPG GQAAVFERVG DRDLLVGEGT
MRDHAVGEKV DLVIGESSQV RIDVENHVPP KNREHDYRVT VINAKPRPAD VEIGFLVDDH
EGLDSRIRKL PRRDGLLTWI VRVPANGSKT FRYRAKAED
|
|---|
| |