| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2611 |
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| Symbol | |
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| ID | 4081664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2752264 |
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| End bp | 2754753 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638010988 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_617650 |
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| Protein GI | 103488089 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATT TGTCCGAATA TCGCAGCCGC GCTACGTCTC TTGCCGACTT CTTGCCCTGG
GTCGCACTGG TGGCGCCGGG CGTGGTGCTT AACAAGGACG GATCGTTCCA GCGCACCGCG
CGCTTTCGCG GTCCCGATCT CGACAGCGCC ACGCCCGCCG AACTGGTTTC GGTGACCGCG
CGACTCAACA ATGCGCTGCG CCGTCTCGGT TCGGGTTGGG CGGTGTTCGT GGAAGCACAG
CGCGTTCCCG CGCTGGACTA TCCGAACAGT GCGTTTCCCG ATCCGGTATC GGCACTCGTC
GATATGGAGC GGGGCGAGCA GTTCCGGGAA GCGGGAAGCC ATTTCGAGAG CGGCTATTAT
CTGACGCTGC TCTGGATGCC GCCCGCCGAA GAGGCCGCCC GCGCGGAGAA CTGGCTCTAT
GAAGGCCGTT CGGGCGGCGG CGTCGATCCG CATGAGCAAC TGGCCGGCTT CATCGATCGG
ACGAACCGGG TGCTCCATCT GGTCGAAGGC TTCATGCCTG AGGTGGGCTG GCTCGATGAC
GCCGAGACCC TGACCTATCT CCATTCATGC GTATCGACCA GGCGCCAGCG CGTGCGGGTG
CCCGAGACAC CTTGCTATCT CGATGCACTG CTCACCGATG AGGGCCTGAC CGGCGGGCTC
GAGCCGAAGC TGGGCGAGCA TCATCTGCGC GTGGCTACAG CCACCGGCTT TCCAACGGCG
ACCTTTCCGA GCCTGCTCGA CGAACTGAAC CGGCTGGCCT TCCCCTATCG CTGGTCGACG
CGGGCGATCA TGCTCGACAA GACCGACGCC ACCAAATTGC TGACGAAGAT CCGGCGCCAG
TGGTTCGCCA AGCGCAAGAG CGTCGCCGCG ATCCTGAAAG AGGTGATGAC CAACGAAGCA
TCGGTGCTGA CCGATAGCGA TGCGTCGAAC AAGGCGGCCG ATGCGGACCT CGCTTTGCAG
GAGCTCGGCG CGGACCATTC GGGGATCGCC TATGTAACCG CCACCGTGAC GGTGTGGGAT
CGCGATCCTG CATTGGCGGC TGAGAAGCTG CGGCTGGTCG AGAAGATCAT CCAGGGCCGC
GACTTCACGG CGACAATCGA GGGCATGAAC GCGATCGAGG CCTGGCTCGG GTCATTGCCC
GGCCATGTCT ATGCCAACGT TCGCCAGCCT CCGATTTCCA CGCTCAATCT CGCCCACCTG
ATCCCCCTGT CAGCGGTGTG GGCGGGGGCG GAACGGGACG AGCATTTCGG TGATGCCCCC
TTGCTTTATG GCAAGACCGA AGGCTCGACC CCGTTCCGTC TTTCGCTTCA TGTCGGCGAT
GTCGGCCATA CGCTGATCGT CGGGCCGACG GGTGCCGGCA AGTCGGTGCT GCTGGCGCTG
ATGGCAATGC AGTTCCGCCG CTATGCCGAC AATCAGATCT TCGCCTTCGA CTTCGGCGGC
TCGATCCGGG CGGCAGCGAT CGCCTGTGGC GGCGACTGGC AGGATCTCGG CGGCGCACTG
CATGACCGGG ACGGTGGAGA GGGGGTGACC CTGCAACCGC TTGCCCGGAT CGACGATCCC
GGCGAGCGTG CCTGGGCTGC GGAATGGCTT GCAGCCATCC TTTCCAGTGA AGGCGTCACG
GTCGATCCCG CCGCCAAGGA GCATCTGTGG ACCGCGCTCG GATCGCTCGC CTCGGCGCCG
CCGCCCGAGC GCACGCTCAC CGGGCTGGCC GTGCTCCTGC AAAGCCAAGA GCTGAAACAG
GCGCTCGCCC CTTATTGCGT CGGCGGACCC TGGGGGCGGC TGCTCGATGC CGAAGCCGAA
CATCTGGGTG AGGCGAGTTT CCAGGCATTC GAGACCGAAG GGCTGGTCGG CGCGGCATCG
GCCGCCGCGG TGCTCGCCTA TCTCTTCCAC CGGATCGAAG GTCGGCTCGA CGGGCGCCCC
ACGCTCATCA TCATCGACGA GGGCTGGTTG GTACTCGACA GCCCGGCCTT TGCCGCGCAG
CTTCGTGAAT GGCTGAAGAC CCTGCGCAAG AAGAATTCAT CGGTCATCTT CGCGACCCAG
AGCCTGGCCG ACATCGAAAC GTCGAGCATT GCGCCCGCCA TCATCGAAAG CTGCCCGACG
CGCATCTTCC TTCCCAATGA GCGCGCCGCC GAGCCGCAGA TCGCACGCGT ATATGAGCGC
TTCGGGCTCA ACGATCGCCA GATCGAGATA TTGAGCCGGG CAACGCCCAA GCGCGATTAT
TATTGTCAGT CGCGGCGCGG CAACCGGCTG TTCGAACTGG GCCTGGGCGA AGTCGCGCTG
GCCTTCACCG CCGCATCGTC AAAGTCCGAC CAGATCCGCA TCGGCGAGCT CGTCGCCAAG
CATGGGACGC ACGCCTTCGC CGCCCATTGG CTCAGGCACC GCGGCCTCTA TTGGGCCGCC
GCCCTGCTGC CCGAACCCGA TCCGCTGACT GCATCCATCC CGAGCGACGA GCTCTTGCTG
CCGCTCGATC CCGAGGAGTT ACGCTCATGA
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| Protein sequence | MMNLSEYRSR ATSLADFLPW VALVAPGVVL NKDGSFQRTA RFRGPDLDSA TPAELVSVTA
RLNNALRRLG SGWAVFVEAQ RVPALDYPNS AFPDPVSALV DMERGEQFRE AGSHFESGYY
LTLLWMPPAE EAARAENWLY EGRSGGGVDP HEQLAGFIDR TNRVLHLVEG FMPEVGWLDD
AETLTYLHSC VSTRRQRVRV PETPCYLDAL LTDEGLTGGL EPKLGEHHLR VATATGFPTA
TFPSLLDELN RLAFPYRWST RAIMLDKTDA TKLLTKIRRQ WFAKRKSVAA ILKEVMTNEA
SVLTDSDASN KAADADLALQ ELGADHSGIA YVTATVTVWD RDPALAAEKL RLVEKIIQGR
DFTATIEGMN AIEAWLGSLP GHVYANVRQP PISTLNLAHL IPLSAVWAGA ERDEHFGDAP
LLYGKTEGST PFRLSLHVGD VGHTLIVGPT GAGKSVLLAL MAMQFRRYAD NQIFAFDFGG
SIRAAAIACG GDWQDLGGAL HDRDGGEGVT LQPLARIDDP GERAWAAEWL AAILSSEGVT
VDPAAKEHLW TALGSLASAP PPERTLTGLA VLLQSQELKQ ALAPYCVGGP WGRLLDAEAE
HLGEASFQAF ETEGLVGAAS AAAVLAYLFH RIEGRLDGRP TLIIIDEGWL VLDSPAFAAQ
LREWLKTLRK KNSSVIFATQ SLADIETSSI APAIIESCPT RIFLPNERAA EPQIARVYER
FGLNDRQIEI LSRATPKRDY YCQSRRGNRL FELGLGEVAL AFTAASSKSD QIRIGELVAK
HGTHAFAAHW LRHRGLYWAA ALLPEPDPLT ASIPSDELLL PLDPEELRS
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