| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2608 |
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| Symbol | |
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| ID | 4081661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2749925 |
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| End bp | 2751298 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638010985 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_617647 |
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| Protein GI | 103488086 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACGACA CCGGCGTAAT CGACACCTTC CTCGGCGTCT TCACCGGCTA TATCGACAGC
GGGTTCGGGC TGCTTGGCGG AGAAGTCGGC TTCCTGTCCT CGACCCTGAT CGCGATCGAC
GTGACGATCG CCGCCCTGTT TTGGGCTTGG GGCGCCGACG AGGACGTGCT GCAGCGCCTG
GTCAAGAAGA CACTCTATAT CGGCGTCTTC GCTTACATCA TCGGCAACTT CTCGCAGCTA
GCCGCAATCC TGTTCGACAG CTTCGCCGGG CTCGGCCTCA AGGCTTCGGG TGGCGGGATG
GCGCTCGCCG ATTTCATGAA ACCCGGCATG GTCGCGGCGA CCGGCCTCGA TGCCGGCGCG
CCGCTGCTCG ACGCGACCGA GGATCTGGTC GGGCCGGTCG GCCTCTTCAC CAATTTCCCC
GAGATCATGA TCCTGCTCGT CGCTTGGCTG ATCGTGGTGC TCGCTTTCTT CGTGCTCGCC
ATCCAGGTGT TCGTCACCAT CATCGAGTTC AAGCTGGTGA CGCTCGCCGG CTTCGTGCTG
CTTCCCTTCG CCTTCTTCAA TCGCACCGCC TTCATGGCCG AGAAGGTGCT GGGGCATGTC
ATCTCGTCGG GAGTCAAGGT GCTGGTGCTG GCGGTCATCA CCGGCATTGG CACGACGCTG
TTCACCCAGT TCATCAATGC CGGCGTCGGC CCCGAACCCG ACATCGAACA GGTCATGGCG
ATCGCGCTCG GAGCGCTGAC GTTGCTCGGG CTCGGCATTT TTGGTCCCGG CATCGCCAAC
GGCATCGTCG CCGGTGGGCC GCAACTTGGC GCAGGCGCCG CTGCCGGCAC GGCGCTCGTC
GCTGGGGCGT CGCTCGTTGG CGGCGCGGCG GGCGCAAAGC TGGCGGCCGG CGCAGCCGGT
TCCGCCGCTG CAGCAGGCGG CAGGATGGCG GCTGGCGCCG CCAGTGCCGG TGCCCGTGCC
GCTGGTTCGA GCGCCGCTGC CTACAGCATG GGCTCATTCG GCAAGACTGG CGCCAGTGCC
GTTGCCGGAG GGATGGCCGC TACGGGAGAG GCGGCGCTTG CCAGTGCCGG CAGGGCTACT
GCTTCACCCT TGCGCAAGAT AGCCGACAAG GCCGGGCAGA CGCTGCGGTC GAACTTTCGC
AGCGGCGCCC GATCGGCTTT CGGCGCGGAG TCGGAGGGCG GGGCCGCCGC GACGGCCACT
TCTGCTCGAT CCGCAGCAGG AACCGCGTCC TCGCCGAACG ACCAGCCCGC TTGGGCGAAG
GCGATGAAGC ATCGCCAGGC CATGACGCAG GGCGCCACCA TGGCGACGCA CACGCTCAAG
GGCGGCGACA GCCACGGCGG CGGCAATGGC CCCGACGTCT CCGACAAGAG CTGA
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| Protein sequence | MNDTGVIDTF LGVFTGYIDS GFGLLGGEVG FLSSTLIAID VTIAALFWAW GADEDVLQRL
VKKTLYIGVF AYIIGNFSQL AAILFDSFAG LGLKASGGGM ALADFMKPGM VAATGLDAGA
PLLDATEDLV GPVGLFTNFP EIMILLVAWL IVVLAFFVLA IQVFVTIIEF KLVTLAGFVL
LPFAFFNRTA FMAEKVLGHV ISSGVKVLVL AVITGIGTTL FTQFINAGVG PEPDIEQVMA
IALGALTLLG LGIFGPGIAN GIVAGGPQLG AGAAAGTALV AGASLVGGAA GAKLAAGAAG
SAAAAGGRMA AGAASAGARA AGSSAAAYSM GSFGKTGASA VAGGMAATGE AALASAGRAT
ASPLRKIADK AGQTLRSNFR SGARSAFGAE SEGGAAATAT SARSAAGTAS SPNDQPAWAK
AMKHRQAMTQ GATMATHTLK GGDSHGGGNG PDVSDKS
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