| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2607 |
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| Symbol | |
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| ID | 4081660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2749223 |
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| End bp | 2749906 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010984 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_617646 |
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| Protein GI | 103488085 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCGAC GACCTTCGAT CCGCTATGGC CAATCGCCCG AGCCGGTCAC GCCCTACCAG
CGTGCCGCGC AGGTCTGGGA TGACCGTATC GGCTCGGCAC GCGTCGCGGC CAAGAACTGG
CGGCTCGCCT TTTTCGGTTG CCTCGTGCTT TCGGGCGGAT TGTCTGCCGG CCTCGTCTGG
CAATCGGCGC GGGGGCATAT CACCCCTTGG GTGGTCGAGG TCGACAAGCT CGGCGAGGCC
CGAACCGTCG CGCCCGCTGA CGTCGATTAT CGACCGACCG ATCCGCAGAT CGCGTTCCAT
CTCGCGCGCT TCATCGAGCA CGTGCGCTCG GTGCCCGCCG ATCCGATCGT GCTGCGCGAG
AACTGGCTGC GCGCCTATGA CTTCGCCACC GACAAGGGCG GGCTCGCGTT GAGCGACTAT
GCGCGAAACA ACGATCCCTT CGCGCTGGTC GGCAAAGTGC AGGTCGCGGT CGATGTGTCG
AGCGTGATCC GCGCCTCCAA TGACAGCTTC CGGGTCGCCT GGACCGAGCG GCGCTATTCT
GATGGTGCGC TTGCCGAGAC CTCGCGCTGG TCCGCGATCC TCACCGTCAC CGTCCAGACC
CCACGCACGC CCGACGGCCT GCGGAAGAAC CCGCTGGGCG TGTTCGTCAA TGCCCTCAAC
TGGTCGAAGG AACTCAGCCA ATGA
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| Protein sequence | MFRRPSIRYG QSPEPVTPYQ RAAQVWDDRI GSARVAAKNW RLAFFGCLVL SGGLSAGLVW
QSARGHITPW VVEVDKLGEA RTVAPADVDY RPTDPQIAFH LARFIEHVRS VPADPIVLRE
NWLRAYDFAT DKGGLALSDY ARNNDPFALV GKVQVAVDVS SVIRASNDSF RVAWTERRYS
DGALAETSRW SAILTVTVQT PRTPDGLRKN PLGVFVNALN WSKELSQ
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