Gene Sala_2606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_2606 
Symbol 
ID4081659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2748213 
End bp2749226 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content66% 
IMG OID638010983 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_617645 
Protein GI103488084 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02775] P-type conjugative transfer protein TrbG 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACAGA TTTCATTTCG CAAGGCTGTT CCCGCTTTGC TGATCTCCGC GTCGGCGCTT 
GGCGCCTGCA CCACGACGTC GGCGAAGCCG CGCACCATCG TCCATGAAGC GCCGCGCGAG
GTGTTGGCGA CCCCGGCTCC CGAGCCGGTG CCTCACGTGC GGGTCGTCGC GATCCCCGAA
CCGCTGCCGC TGCCGGGCCA ATTGAAGCCG GTAGAGAGCA GCATGCCGCC ACCGGAGACG
GCTGATCCGC GCCGGCGCGT GAGCACCGCC AATGCCGCGG CTCGTGTGCA GCCCTCCCGC
GACGGCTATC TCAATGCGAT TCAGCAATAT CCCTGGACCG ATGGTGCGCT CTATCAGGTC
TATGCCGCTC CGGGCCAGGT GACGGACATC GCGCTTCAGG AAGGCGAACA ACTTGTAGGC
CCTGGGCCGG TCGCGGCGGG GGACACGGTG CGCTGGATCA TCGGCGACAC CGTAAGCGGC
AGCGGCGCGA ACGCTCGCGT TCATATCCTC ATCAAACCCA CCCGGCCGGA CATCTCGACC
AACCTCGTCA TCAACACCGA CCGGCGCACC TATCATCTCG AACTGCGCGC GACGCCTTCG
ACCTGGATGG CCTCGGTGTC GTGGACCTAT CCGCACGATC AGCTTATCGC CCTACGGGCC
GCCGAAGCCG AGCGGGCGCG CGATACGCCG TTGGCTTCGG GCATCGATAT CGCGACCCTC
AATTTTCGCT ATCGGATCGA CGGGGACCGG CCCGACTGGC GGCCGGTGCG CGTGTTCGAT
GATGGCCGGC AAATCTTCAT AGAATTTGCC GAAGGCGTGG AACGCACCGA CATGCCGCCG
CTATTCGTCA CTGGCGACAC CGGGGCCGCC GAGCTGGTTA ATTACCGCGT GGCGGGCCGC
TACATGATCG TCGACCGGCT CTTTTCCCGT GCCGAACTGC GGCTTGCGTC CGGCAAACGC
GAGGCGAGGG TCAGCATCGA GCGCGAAAGC CCGCGCCGCA AGGGCCGGTC ATGA
 
Protein sequence
MRQISFRKAV PALLISASAL GACTTTSAKP RTIVHEAPRE VLATPAPEPV PHVRVVAIPE 
PLPLPGQLKP VESSMPPPET ADPRRRVSTA NAAARVQPSR DGYLNAIQQY PWTDGALYQV
YAAPGQVTDI ALQEGEQLVG PGPVAAGDTV RWIIGDTVSG SGANARVHIL IKPTRPDIST
NLVINTDRRT YHLELRATPS TWMASVSWTY PHDQLIALRA AEAERARDTP LASGIDIATL
NFRYRIDGDR PDWRPVRVFD DGRQIFIEFA EGVERTDMPP LFVTGDTGAA ELVNYRVAGR
YMIVDRLFSR AELRLASGKR EARVSIERES PRRKGRS