Gene Sala_2598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_2598 
Symbol 
ID4081651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2737321 
End bp2737926 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content62% 
IMG OID638010975 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_617637 
Protein GI103488076 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCATCGT CCGCTCCGCC GTTTCGCCAC CATCGGCCTC CCTTTTCGGT TTCGTCGGGA 
GCGCATAACT GCCCTGTCGA CGTCTTCGAG CCTGCCTGTG GAGAGGCCTC CGCGACCAAC
CTGGACGAGA CGTTTCGTAC CGAACGCAGG GCGCTCTTGC GCTATCTGGG GCGCCGTGCG
GGTCATGATG CCGCGCCCGA TCTGGTGCAG GAAGTGTTCG CCCGAGCAGC CGGCAGCGCG
CAGGCGTCGC GTCTCGCCAA TCCGGCGGCG TTCGTCAGGC GCATCGCCAG GAACCTGCTG
ATCGACCGCG CGCGTCGCCG CGAGAGCGAC AATAATATCG TGATCTTTCC TCTCGACGAG
CAGCGCGACC TAAGCGTGCC GCCGGAACAA ACTCTGAATC TCGAAGCGGC CGACCTGTTG
CGCATCTACG AACAGGCGGT CAATGATCTG CCCGAGAAGA CCCGCCGGGT CTTTATGATG
AGCCGGGACG AAGAACTCAC CTATAGTCAG ATCAGTGAAC AACTCGGGAT CAGCATGGCG
ACAGTGCAAT ATCATATGGT GCGCGCGATC GCCTTCGTCG CCGCGGCGGT GAAGGATCAT
CGATGA
 
Protein sequence
MSSSAPPFRH HRPPFSVSSG AHNCPVDVFE PACGEASATN LDETFRTERR ALLRYLGRRA 
GHDAAPDLVQ EVFARAAGSA QASRLANPAA FVRRIARNLL IDRARRRESD NNIVIFPLDE
QRDLSVPPEQ TLNLEAADLL RIYEQAVNDL PEKTRRVFMM SRDEELTYSQ ISEQLGISMA
TVQYHMVRAI AFVAAAVKDH R