Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2578 |
Symbol | |
ID | 4081611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2718261 |
End bp | 2719418 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638010955 |
Product | secretion protein HlyD |
Protein accession | YP_617617 |
Protein GI | 103488056 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.96147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCACAC AGGACAAACG CCTTCTTGGC GGCGTGGCTG GCGCGGTGCT GCTCGCGGCC GTCGGCGGCT TCTCGGTTGC CCGCTGCACC GCAGATCCGG CTGCCGAGAC CCGAAATGCC GATAAGGCAG AAGAAGCGGA AGCTCACACT GATAACCTTG CGATCACTGC CGATGCGATC CGTGCAGCAG AGATCGCCGT AGAAGCGGTG CGGGCTGGCG GGCTCGGATC CGAAATCCTC GCGCAGGGCA CGGTCACCGC GACACCGGCG GGTGAAGCGA TCGTCACGGC CCGCGCCGGC GGCGCCGTCA CGCGCGTTCT CAAGCGCCTG GGCGATCCGG TACGTGCCGG AGAGACGCTG GCCATCGTGC AAAGCCGAGA CGCCGCCCAG ATCGCCGCGG ACCGAACGGC AGCCGAGGCG CGCTCGGTTC TGGCCCAGCG CACACTAGCT CGGGAGCGCC ATCTCTACGA GCAGAAGGTC ACCGCCCGTG CCGATTATGA GCAGGCGCAG GCAGAGGCCG CAGCCGCTAC GGCCGAAGCG CGAAGAGCCC AGGTTGCGGC CAGTGCTGCG AACGTCACAC GCGATGGCAG CGGTGCGATC GTGGCCAGCC CGATCTCCGG GCGGGTGACG GCGGAAAGCG TCAGCCTTGG CGCGTTCGTG CAACCGGAGA CGGAGTTGTT CCGCATTGCG GACCCGTCCA AAGTACAGGT CGAGGCTGCC GTCGGTCCAA TTGACGCACA GCGGCTTGCT CCCGGCGACC GGGCCATCGT CGAGCTGCCC GATGGCCGAA CTCTAGACGC TCGTGTGCGT GCCGTTACGC CTGGTCTCGG CGGCGAGACC CGTTCGGCCA CGGCTGTGCT CGATGTCCAG GCAAGTCTGC AGCCTGGGCT TGCCGTACGC GTCCGGCTGC TGCCGAGCCG TGGTGAAGTG TCGGATGCAA TCGTCATATC GGAGGATGCG CTTCAATCCC TCGAAGGACG AGATATTGTT TTCGTGCGAA CCAATCAGGG CTTCCGCGCG CAAAAGGTGA CAATCGGCCG CCGCAGCGCC GGCCGCGTCG AGATTATCTC AGGCCTGAAG GCAGGCGAGA TGATCGCAAC CCAAAATGCA TTCCTGCTCA AGGCCGAGCT CGGCAAGGGC GCGGGCGAGG AGGAATAA
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Protein sequence | MITQDKRLLG GVAGAVLLAA VGGFSVARCT ADPAAETRNA DKAEEAEAHT DNLAITADAI RAAEIAVEAV RAGGLGSEIL AQGTVTATPA GEAIVTARAG GAVTRVLKRL GDPVRAGETL AIVQSRDAAQ IAADRTAAEA RSVLAQRTLA RERHLYEQKV TARADYEQAQ AEAAAATAEA RRAQVAASAA NVTRDGSGAI VASPISGRVT AESVSLGAFV QPETELFRIA DPSKVQVEAA VGPIDAQRLA PGDRAIVELP DGRTLDARVR AVTPGLGGET RSATAVLDVQ ASLQPGLAVR VRLLPSRGEV SDAIVISEDA LQSLEGRDIV FVRTNQGFRA QKVTIGRRSA GRVEIISGLK AGEMIATQNA FLLKAELGKG AGEEE
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