Gene Sala_2578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_2578 
Symbol 
ID4081611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2718261 
End bp2719418 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content66% 
IMG OID638010955 
Productsecretion protein HlyD 
Protein accessionYP_617617 
Protein GI103488056 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.96147 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCACAC AGGACAAACG CCTTCTTGGC GGCGTGGCTG GCGCGGTGCT GCTCGCGGCC 
GTCGGCGGCT TCTCGGTTGC CCGCTGCACC GCAGATCCGG CTGCCGAGAC CCGAAATGCC
GATAAGGCAG AAGAAGCGGA AGCTCACACT GATAACCTTG CGATCACTGC CGATGCGATC
CGTGCAGCAG AGATCGCCGT AGAAGCGGTG CGGGCTGGCG GGCTCGGATC CGAAATCCTC
GCGCAGGGCA CGGTCACCGC GACACCGGCG GGTGAAGCGA TCGTCACGGC CCGCGCCGGC
GGCGCCGTCA CGCGCGTTCT CAAGCGCCTG GGCGATCCGG TACGTGCCGG AGAGACGCTG
GCCATCGTGC AAAGCCGAGA CGCCGCCCAG ATCGCCGCGG ACCGAACGGC AGCCGAGGCG
CGCTCGGTTC TGGCCCAGCG CACACTAGCT CGGGAGCGCC ATCTCTACGA GCAGAAGGTC
ACCGCCCGTG CCGATTATGA GCAGGCGCAG GCAGAGGCCG CAGCCGCTAC GGCCGAAGCG
CGAAGAGCCC AGGTTGCGGC CAGTGCTGCG AACGTCACAC GCGATGGCAG CGGTGCGATC
GTGGCCAGCC CGATCTCCGG GCGGGTGACG GCGGAAAGCG TCAGCCTTGG CGCGTTCGTG
CAACCGGAGA CGGAGTTGTT CCGCATTGCG GACCCGTCCA AAGTACAGGT CGAGGCTGCC
GTCGGTCCAA TTGACGCACA GCGGCTTGCT CCCGGCGACC GGGCCATCGT CGAGCTGCCC
GATGGCCGAA CTCTAGACGC TCGTGTGCGT GCCGTTACGC CTGGTCTCGG CGGCGAGACC
CGTTCGGCCA CGGCTGTGCT CGATGTCCAG GCAAGTCTGC AGCCTGGGCT TGCCGTACGC
GTCCGGCTGC TGCCGAGCCG TGGTGAAGTG TCGGATGCAA TCGTCATATC GGAGGATGCG
CTTCAATCCC TCGAAGGACG AGATATTGTT TTCGTGCGAA CCAATCAGGG CTTCCGCGCG
CAAAAGGTGA CAATCGGCCG CCGCAGCGCC GGCCGCGTCG AGATTATCTC AGGCCTGAAG
GCAGGCGAGA TGATCGCAAC CCAAAATGCA TTCCTGCTCA AGGCCGAGCT CGGCAAGGGC
GCGGGCGAGG AGGAATAA
 
Protein sequence
MITQDKRLLG GVAGAVLLAA VGGFSVARCT ADPAAETRNA DKAEEAEAHT DNLAITADAI 
RAAEIAVEAV RAGGLGSEIL AQGTVTATPA GEAIVTARAG GAVTRVLKRL GDPVRAGETL
AIVQSRDAAQ IAADRTAAEA RSVLAQRTLA RERHLYEQKV TARADYEQAQ AEAAAATAEA
RRAQVAASAA NVTRDGSGAI VASPISGRVT AESVSLGAFV QPETELFRIA DPSKVQVEAA
VGPIDAQRLA PGDRAIVELP DGRTLDARVR AVTPGLGGET RSATAVLDVQ ASLQPGLAVR
VRLLPSRGEV SDAIVISEDA LQSLEGRDIV FVRTNQGFRA QKVTIGRRSA GRVEIISGLK
AGEMIATQNA FLLKAELGKG AGEEE