| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2567 |
|---|
| Symbol | |
|---|
| ID | 4081600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2704996 |
|---|
| End bp | 2706297 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638010944 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_617606 |
|---|
| Protein GI | 103488045 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCGAT TGCTCGCGGC CCTGCTGGCC GCGACCGCTT GCGCGACCAT CGCGCAGGCC
CAAACCTCGT CGCCGGTTGA TACCGGGGCC GCTCAGCCAC AAAGCACGTC GCCCGCCCTA
ATGGGCCCGG CTTTCACGGT CGATCGCGCA CTCGAGCTTG CCGGCGTCGT CTCGCCAGCG
CTCGAAGCCG CCTCGGCGGA CATTCGCGCT GCCGAAGCGG GACGGCGCGT CGCGGGGCTC
CGGCCCAATC CCAGCGTCAC GGTCGAAGCT GAAAACGTCG CTGGTTCCGG CCCGTACCGT
GGCACGCAGA GCCTGGAAGC GACCACATCG CTTACGCTGC CGATCGAACT CGGCGGCAAG
CGATCGGCTC GGATCGCCGT CGCGGACGCT CGAACCGACC GGGCCACCAT ACAGGCCACG
ATCGCACAAG CCGATCTCCG GCTGAACGTC ATTCGCGCCT ACGCGGAGGC CGCCTCGGCG
GAACGTCGGC TCATCACCGC CCACGATCAG GCCCGTATCG CAAATGAAAC CCTGCGCGCC
GCGCAGGTCC GCGTGCAGGC GGGCCGCGCG TCGCCGATCG AAGCTGAGCG AGCGAACGTA
GCACGGGTCA ATGCCGACGC TGCGCTAACG CGGGAAGAAC GGGCTGTCGA AGTCGCGCGG
TTCACCCTGT CGCGTATTAT AGGCCAACCC ATCGCGGGGC CGCTCGACAC GGACTGGTTC
TCCCGCGTGC CCGCGACCTA TGGCCCCCTC CGGCCAATCG ACAGCACGGG CACGCTCATG
ATGGCGGCGG CCAATGCCGA CTTCGCTATC GCCGACGCCG GCGTGCGCCT CGCGCGCTCG
CAGCGCGTGC CCGACCTGAC GCTTGGGGCC GGCGCGCGCC GGCTCGAGCA GACCAATGAC
ACGGCGGCGA TTTTCAGCCT GTCGATCCCG ATCCCGATGT TCAACAACGG CCGGGCCGCG
TTGAGCCAAG CTACCGCCGA ACGGCAGAGC GCGGACGCGC GGCGACGCCT CACGGCGCTC
GATGTGGATC AGGCCATTGC ACGCGCGCAA GCCGATGCCG CCAACGCCGC CACAAATGCG
GCGGCGGCCA GTGGACCCGC GCTCGCGGCG GCCGAAGAAG CCGCCCGCAT CGCCCGCATC
GGCTATCGGG AGGGCAAGTT CAGCCAGCTC GATCTACTCG ATGCCGAACG CACGCTAGCC
GGAACGCGAG CGGCGGCGAT CGACGCTCTG CTCTCCTACC ACATCGCCCA GGCGCAGCTT
GAGCGGCTTA CCGCCCGCGC GCCGGTCACA CAGGGGGAAT GA
|
|---|
| Protein sequence | MHRLLAALLA ATACATIAQA QTSSPVDTGA AQPQSTSPAL MGPAFTVDRA LELAGVVSPA
LEAASADIRA AEAGRRVAGL RPNPSVTVEA ENVAGSGPYR GTQSLEATTS LTLPIELGGK
RSARIAVADA RTDRATIQAT IAQADLRLNV IRAYAEAASA ERRLITAHDQ ARIANETLRA
AQVRVQAGRA SPIEAERANV ARVNADAALT REERAVEVAR FTLSRIIGQP IAGPLDTDWF
SRVPATYGPL RPIDSTGTLM MAAANADFAI ADAGVRLARS QRVPDLTLGA GARRLEQTND
TAAIFSLSIP IPMFNNGRAA LSQATAERQS ADARRRLTAL DVDQAIARAQ ADAANAATNA
AAASGPALAA AEEAARIARI GYREGKFSQL DLLDAERTLA GTRAAAIDAL LSYHIAQAQL
ERLTARAPVT QGE
|
|---|
| |