| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2525 |
|---|
| Symbol | |
|---|
| ID | 4081499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2661658 |
|---|
| End bp | 2662488 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638010903 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_617565 |
|---|
| Protein GI | 103488004 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.853805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGG TTCGCGGCGA TAGTTGGAGC GGACCGCAGG CGAGCGGGTC GGGAACGCGC
CGGCGGCCGA TGAACGATGT GAAGCATTAT TATCTGACAG AGGAACTCGC ACAGGAATTT
ACAGGAGCAG ACAGAGAAGA GCAGCTCTTT GCCGCACTGA CCAAGGCTGC GGGCCGAATG
GGGTTCGACC ATTTCGCGCT TGCTTTCGAT CGGCGCGGAA CCGGCGAACC GGCGTCGATT
CTCGTGCACA ATTATCCCGA CGCCTGGGCC AAGGTCTATG TCGGCTTCGA TCTCAGCGGA
ACCGATCCGA TCCGCCGCGC TAGCGAGCGA TCGCTGACCG GCTTCGAATG GCGCCACGTC
GATCGCTATA TTCCGCTGAG CCGCGGCGAC CGCCAATTGC TGTCGGTGGC GCGCGATAGC
GGCGTCGGTG ACGGCTTCAC GGTTCCTCGC CATCTGCCCG GCGAGGCATC GGGAACCTGT
TCCTTCGCAG TCCGTCCGCA CGCGGACATT CCGGCGGACA TGCTCCACGC CGCCGAAATC
CTCGGCGCGA TCGCCATCGC TTCGGCGCGT GAGTTGATCG GCTCCTCTCC TTTACGGCCA
CGCCCGATAC TTACCGAACG GCAACGCGAA TGCGTGCTCT GGTCGGCGCG CGGCAAGACC
GCCGGCGAGA TCGCCGATAT TCTCGGGATC AGCGAAGAGA CGGTCGTGCG CCACCTCAAG
ATGGCGCGCG AGCGCTATTC GGTGCATTGC CGCTCGATGC TGATCCTGTG CGCGCTGTTC
GACGGGCTGA TCGGCTTCTC GGACATCTAC GACTGGTGGC GCCCGAACTG A
|
|---|
| Protein sequence | MEKVRGDSWS GPQASGSGTR RRPMNDVKHY YLTEELAQEF TGADREEQLF AALTKAAGRM
GFDHFALAFD RRGTGEPASI LVHNYPDAWA KVYVGFDLSG TDPIRRASER SLTGFEWRHV
DRYIPLSRGD RQLLSVARDS GVGDGFTVPR HLPGEASGTC SFAVRPHADI PADMLHAAEI
LGAIAIASAR ELIGSSPLRP RPILTERQRE CVLWSARGKT AGEIADILGI SEETVVRHLK
MARERYSVHC RSMLILCALF DGLIGFSDIY DWWRPN
|
|---|
| |