| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2520 |
|---|
| Symbol | |
|---|
| ID | 4081631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2656915 |
|---|
| End bp | 2658999 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010898 |
|---|
| Product | ParB-like nuclease |
|---|
| Protein accession | YP_617560 |
|---|
| Protein GI | 103487999 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.216239 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAT CGCTTCCGAA AATCACCCTC GCCCCGTCGC GCGACATTCC CCTCGACCGC
CTGCGCCTGT CGCAGGCCAA TGTGCGGCGC GTGAAGGCGG GGGTATCGAT CGACACGCTG
GCGGCCGACA TCGCGCGCCG CGGATTGCTC CAGAGCCTCA ACGTGCGGCC GCTGCTCGAT
GGCGAGGGGC AGGAAACGGG GGAATTCGAA ATTCCAGCCG GAGGCCGGCG CTTCCGCGCG
CTCGAACTGC TGGTGAAGCA GAAAAGGCTC GCGAAGGACG CGCCGATCCC CTGTGTCGTG
GGCGGTGCGG CCAATGACAT ACTCGCCGAA GAGGACAGCC TCGCCGAAAA CAGCTTTCGC
GAGGCACTGC ATCCGCTCGA CGAATTTCGC GCGATGCAGG CGATGGTCGA GAAGGACGCC
GGCATCGAGG CAATCGCCGC GCATTTTCAC ACCACGCCCG CCGCGGTGCG GCAGCGGTTG
AAGCTCGCCG GCGTCTCGCC GAAGCTGCTC GAGCTCTATG CCGACGAGGC GATGACGCTC
GATCAGCTCA TGGCCTTCAC CATCGCCGAG GACCATACGC GGCAAGAAGA GGTCTGGGAC
CAGCTCGAAC ATAGCTTCAA CAAGTCGGCG ACCTGGATCC GCCAGAAGCT CACCGAGAAC
AGCGTTCGCG CGGGTGACAA AAGGGCGCGC TTCGTCGGTC TCGACACCTA TCTCGAAGCG
GGCGGCAGCA TCGCGCGCGA CCTGTTCGAA TCCGATGGCG GCGGCTGGCT CACCGACCCC
GCACTTCTCG ATCGGCTTGT CGATGCCAAG CTGAAGGCCG AGGGCGCGCG CATCCTCGCC
GAGGGCTGGA AATGGGTGAC GACCGCGATC GACCTGCCGT GGGACGCAAC GCGCGGGTAT
CGCGAGATCG ACCGCGAAGA GGTCGCGATG ACCGAAGCCG AAGCGACGCG CGTCGCCGAG
CTTGAAGCCG AAGGCGAGGA ACTCGGCGAT GAATGGGCCG ATGCGCACGA CGTGCCCGAC
GAGGTGCATG CGCGGATCGA GGCGATCGAT GCCGAACTCG GTGCTTTGGT CGACCGGCCG
CTGATCTTCG ATCCCGCGGA CATGGCGGTG GCGGGCGCAT TCGTCTCGCT CGACCGCGAT
GGGTCGGTGC GCGTCGAGCG CGGCTTCGTG AAGCCCGAGG ATCAACTGCG TGATGGACTC
GGCAGTGACA GCGCGTCGGA GCCGGGCGAT ACGGCGCGCT CCACTGGCCG CGGCGACGGC
GAACCGAAGA AGGCGCAGGA TGACGCCGAA GGAGCTGAGG AACCGGGTGC GCTGCGCCCG
CTCCCCGACC GTCTCGTCTC GGACCTCACG GCTTGGCGCA CCCTCGCGCT GCAGGACAGG
GTCGCGCAAG ACCCGGCGCT CGCCTTCGTC GCCGTTCTCC ACGTCCTCGT GCTGGGCTGC
TTCTACAGCT TCAGCCGCGA GAGCTGCGTC CAGATCGCGG CGAATCGCGT CTCCTTTTCC
AATGCCCCTG CCGGTTTGCG CGATTGCGCG CCCGCGCAGG CGATCGACGC GCGCTCGGGG
GCATGGAAGG CGCGGCTGCC GCAGTCGGAT AAGGAAGTGT GGAGCTTTCT GCTCACCCTC
GATGGGGAGG AGCAGTCGCA GCTCCTGGCG CATTGCGGCT CGCTCTGCGT CAACGCCCAG
GCCGAGGTCG TTCCCAAATA TGACAATGGC CGCATCTCGG CGCATGGCGT CGAGCGCCGG
ATCGCCCACA GCCATGTCCT CGCGCTGGCC GCGGGGCTCG ATGTGCATGG CGCGGGGTGG
CGGCCGACCG CGGCAGGCTA TTTCAGCGGT GTGACCAAGC CGCAGATCCT CGCCGATGTC
GCCGAGGCGC GCGGCGACGA AGCTGCCCGC ATGATCGGCC ATCTCAAGAA AGCCGATATG
GCCCGCGAGG CCGAACGGCT GGTCGAAGAA ACGACCTGGC TCCCGGCGCC GATGCGAACG
CCGGGTCTGG ACGACATCGA TCCGGACGGC GGTGAAATGG CGGTACCCGC CGATGCCGAC
GAGGGCGATC CCTGCGACGC CGAGCTGCCC GTCGCGGCGG AGTGA
|
|---|
| Protein sequence | MAKSLPKITL APSRDIPLDR LRLSQANVRR VKAGVSIDTL AADIARRGLL QSLNVRPLLD
GEGQETGEFE IPAGGRRFRA LELLVKQKRL AKDAPIPCVV GGAANDILAE EDSLAENSFR
EALHPLDEFR AMQAMVEKDA GIEAIAAHFH TTPAAVRQRL KLAGVSPKLL ELYADEAMTL
DQLMAFTIAE DHTRQEEVWD QLEHSFNKSA TWIRQKLTEN SVRAGDKRAR FVGLDTYLEA
GGSIARDLFE SDGGGWLTDP ALLDRLVDAK LKAEGARILA EGWKWVTTAI DLPWDATRGY
REIDREEVAM TEAEATRVAE LEAEGEELGD EWADAHDVPD EVHARIEAID AELGALVDRP
LIFDPADMAV AGAFVSLDRD GSVRVERGFV KPEDQLRDGL GSDSASEPGD TARSTGRGDG
EPKKAQDDAE GAEEPGALRP LPDRLVSDLT AWRTLALQDR VAQDPALAFV AVLHVLVLGC
FYSFSRESCV QIAANRVSFS NAPAGLRDCA PAQAIDARSG AWKARLPQSD KEVWSFLLTL
DGEEQSQLLA HCGSLCVNAQ AEVVPKYDNG RISAHGVERR IAHSHVLALA AGLDVHGAGW
RPTAAGYFSG VTKPQILADV AEARGDEAAR MIGHLKKADM AREAERLVEE TTWLPAPMRT
PGLDDIDPDG GEMAVPADAD EGDPCDAELP VAAE
|
|---|
| |