| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2505 |
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| Symbol | |
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| ID | 4081616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2640552 |
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| End bp | 2642795 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010883 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_617545 |
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| Protein GI | 103487984 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00363103 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACGCA AGGCGCAGCT TCTTTTCGGT ACGGCCGCGC TCTGGGTGGC GGCGGCCGCG
CCCGCTTCCG CCCAAGATCG GGCTCCCGAG GCTCTTCCGG CCGATACGGC GGCGGAAGCG
GGCGATGACG GCGCGATCGT CGTCACCGCG CGGCGCCGCG AGGAACGCCT GTCCGATGTG
CCGACCGCGG CATCGGTGAT CGACGCGACG GCGCTCAACG ATCGCGGCGG GGCGACGGGA
AGCGGCGAAC TCCTCGCCGA CCAGCCGAGC GTGCGCTTCA ACAATCTCAG CTCGTCGATC
ACGTCCGAAA TTTCGATCCG CGCGTCGTCG ACGGCGCGCG CGACCAACGG TGACCCGAGC
GTCGGCCTCT ATCGCAACGG CGCCTATATC GCGGGCGGTC CGGTCGGCGG GCGCAACTTC
ACGCGCCTCG ATATGCTCGA CATCGGCCGC GTCGAGGTGC TGCGCGGGAC GCAGGGTGCG
CTCTACGGCC GCAACGCGGT CGGCGGCGCG ATCAACATCA TATCGGCCGA GCCCGAATTC
GACCTGTCGG GTTGGGCCAG CGTGCGATAC GGGTTCGAGA ACAACAGCCT GCAATTGCAG
GGCGCGGTGA ATATGCCGCT GGGCGACGGG ATCGCGGCGC GGATCAGCGG CGATCTGGTC
GAACAGGACA AGGGCTTTTT CTACAACCCC GACAACGACG TCTATTTCGA CCGGCAGAAG
GGGCATGGCC TGCGCGGGCA GATCCGCCTG AAGCGCGGAC CGGTCGACGC GGTGATCATG
GCCGAGACGC AGCGGCTGAC GACGCCGTCG ATCCATTATC AGATCTTCAT TCCGGCCGGC
ACGCCGGGCT TTCCGGGCGG CTATATCCAG GACCGTTTCC GTTATCCGTG GAGCACCGCG
CCGCGGGCGT CGCAGGACGT CGACGGGTTG CAGGCGATCG TGCGTGTCGA TCTTGGCGGA
GCCGACCTCA CCTCGACGAC CTCCTTCCGC AAGCGACACA GCGAATATGA TCTCGACAAT
GATGCGGTCA GCCCCGCCGA ACTGGCGCGT GCGCGCGCCG CGGGCGAAGT CGGGCCGCTG
ACCCCGCTCG ACCCGGGCAG CGCGTCCTAT GTGGTCGATA CGACCGACAA TTTCTCGCAG
GATATCCATG TCAGCGGATC GAACGACCGG CTGACCTGGC TGGTGGGGGC GGAAATGCTC
CTCCTCGACA GCGATTTTTC GGTGACGACG ACGCGCACGC CGACGCTCGC CAACCCGTCG
CCGGGCAATA TCGCGCCCGC GCGGCTCCAT TTCGAAAGCT ATGCCGCCTA TGGTTCGCTC
GGCTTCGACC TGACCGACAG CCTCAATATC ACCGGCGAAT TGCGCTATAC GCACGACAGC
CGCAGCATCA GCGCGCGGCT CTATGATCTC GGCACCGGGC TCCCGACCGG CGGGCCCTCG
CGGATCATCG ACGACAGCAT CACCGCCGAC AATCTCTCCT ACAATGCGAC GCTGTCGTAC
AAGCTGGCAC CCGACATCCT CGCTTATGCC AAGGTCGGGA GCAGCTATCG CGCTGGCGGC
TTCAACACGC GCTTGTCCGA CCCGCGCGCG CCGAGCCCGG TGCAGGTGTT GTTCGGCAAC
GAAAACAGCA CCAGCTACGA GGTCGGTTTC AAGGGTAGCC CGATGCGGCG CGGCTATTTT
GCGGTCGCGG GCTATTATAC CCAGCTCGAC GATCTGATCG CGCAGGTCGA CGACGGCTGC
GCGCTGACCA ACCCCACCTG CCCGGTCGCG GCGGTGAGCT ATCTCACCAA CGCGGGCGAT
GCGAAGAGCT GGGGCGTCGA AGCCGAATAC AGCCAGGGCT TCGACCTTGG CCAAGGCAGC
GGGCGTCTGG CGCTGAGCGG GTCGCGGCAG GGCGGCAAGG TGAAGAGCGG GCGTTACGAC
GGGCTCGACC TCGCGCAGGT GCCCGACTGG CTCGCTTCGG CGAACCTCAA CCTGCGCGCC
CCGGTCGCGA AAAATGTTTC GCTGACCGGC AACATCCTGG TCAGCGGCCA ATGGGGCGGG
AAGCAGGAAC TGACCGCGAC CTCGGTCGAC CTCGACGACT ATGTGCTCGT CAACCTGCGC
GTCGGGGTCG AGTTCGGGAA GGTGAGCATC AGCGCCTTCG CGAACAACCT CTTCGACAAG
GTCTACTATG TCGCGCAGGC GCCGACGATC AACCGCTACA GCCAGCCGCG AGTGATCGGG
GTCGAAGGAC GTATCTCCTT CTGA
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| Protein sequence | MGRKAQLLFG TAALWVAAAA PASAQDRAPE ALPADTAAEA GDDGAIVVTA RRREERLSDV
PTAASVIDAT ALNDRGGATG SGELLADQPS VRFNNLSSSI TSEISIRASS TARATNGDPS
VGLYRNGAYI AGGPVGGRNF TRLDMLDIGR VEVLRGTQGA LYGRNAVGGA INIISAEPEF
DLSGWASVRY GFENNSLQLQ GAVNMPLGDG IAARISGDLV EQDKGFFYNP DNDVYFDRQK
GHGLRGQIRL KRGPVDAVIM AETQRLTTPS IHYQIFIPAG TPGFPGGYIQ DRFRYPWSTA
PRASQDVDGL QAIVRVDLGG ADLTSTTSFR KRHSEYDLDN DAVSPAELAR ARAAGEVGPL
TPLDPGSASY VVDTTDNFSQ DIHVSGSNDR LTWLVGAEML LLDSDFSVTT TRTPTLANPS
PGNIAPARLH FESYAAYGSL GFDLTDSLNI TGELRYTHDS RSISARLYDL GTGLPTGGPS
RIIDDSITAD NLSYNATLSY KLAPDILAYA KVGSSYRAGG FNTRLSDPRA PSPVQVLFGN
ENSTSYEVGF KGSPMRRGYF AVAGYYTQLD DLIAQVDDGC ALTNPTCPVA AVSYLTNAGD
AKSWGVEAEY SQGFDLGQGS GRLALSGSRQ GGKVKSGRYD GLDLAQVPDW LASANLNLRA
PVAKNVSLTG NILVSGQWGG KQELTATSVD LDDYVLVNLR VGVEFGKVSI SAFANNLFDK
VYYVAQAPTI NRYSQPRVIG VEGRISF
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