| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2493 |
|---|
| Symbol | |
|---|
| ID | 4081369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2633773 |
|---|
| End bp | 2634363 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638010871 |
|---|
| Product | conjugal transfer protein traF |
|---|
| Protein accession | YP_617533 |
|---|
| Protein GI | 103487972 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.955009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC GGTTCTTGTG CGCGACGGTC GGCGCAGCGG CGCTGTTTAC CGCTTCTTTC
GTCGCAGTCG CCTGGCTGAA GCCGGCGCCG CGACTGCTCT GGAATGCGAG CGCCAGCGCC
CCCATCGGCG TGTACCGGAT CGATGTCGGT GCGCGGCCTC GGCTCGGCGA GCTTGTCGCC
ATCGACCCGC CGCCGGCGCT TGCGATCTAT CTTTCCCGTC GCGGCTATCT GCCGCGCGGC
GTTCCGCTGC TGAAGCGCGT CGCCGCGCTT CCGGGCTCTC TGGTCTGCCG TTCGGGTGCA
TCCGTCACGA TCGACGGCGC GGGCGTCGCC CGTGCGCTGG CGCGCGACGG GGCGGATCGT
CCGCTCCCGG TCTGGCGCGG TTGCCGGATC GTCGGGGCGC AGGAATTATT CCTGATCAAT
GCCGCGCGGG GCAGCCTCGA CGGGCGATAT TTCGGGCCGA TTTCGGCGTC CGGACTCATC
GGCACGGCGC ACCCTGTTCT GACGCGCACC GACGCCGAAG CATCGCTTCG CTGGCACCGC
GCGAGCCCTT CCTTCGAACC AATTGCCGAC GAGATGGAGC AAGGACGATG A
|
|---|
| Protein sequence | MNRRFLCATV GAAALFTASF VAVAWLKPAP RLLWNASASA PIGVYRIDVG ARPRLGELVA
IDPPPALAIY LSRRGYLPRG VPLLKRVAAL PGSLVCRSGA SVTIDGAGVA RALARDGADR
PLPVWRGCRI VGAQELFLIN AARGSLDGRY FGPISASGLI GTAHPVLTRT DAEASLRWHR
ASPSFEPIAD EMEQGR
|
|---|
| |