| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2480 |
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| Symbol | |
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| ID | 4081318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2618711 |
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| End bp | 2619991 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638010858 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_617520 |
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| Protein GI | 103487959 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.206127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATA CGGGCGTCAT CGACCAATTC CTGTCGGTCT TCTCGACCTA TATCGATAGC
GGCTTCGGGC TACTCGGCGG CGAGGTCGGC TTCCTCTCCT CGACGCTGAT CGTGATCGAC
GTGACGATCG CGGCGCTCTT CTGGGCTTGG GGCGCGGACG AGGATGTGCT GCAGCGCTTG
GTCAAGAAGA CGCTCTACAT CGGGGTCTTT GCCTTCATCA TCGGCAACTT CCAGAGCCTC
GCGACGATCA TGCTCGAAAG CTTCGCGGGT CTCGGCCTCA AGGCGAGCGG CGGGGCGATG
GCGATCGGCG ACTTCATGCG GCCGGGCGTC GTTGCGGCGA CAGGGCTCGA TGCGGCCGAG
CCGCTGCTCG ACGCCAGCGC CGACCTCCTG GGACCGGTCG GGCTCTTCAC CAATTTCGTC
CAGATCATGA TCCTGCTCGT CGCTTGGGTG ATCGTGGTGC TCGCCTTCTT CATCCTCGCG
GTACAGGTCT TCGTGACGAT CCTCGAGTTC AAGCTCGTCA CGCTCGCGGG CTTCGTCCTC
ATCCCCTTCG CCTTTTTCGG GCGGACAGCT TTCATGGCCG AGCGTGTCCT CGGGCATATC
ATATCGTCGG GCATCAAGGT GCTCGTACTC GCCGTCATCA CCGGTATCGG CACGACCTTG
TTCGACCGCT TTCTCGAGGC CGGTATCGGC CCAGAGCCTG ATATCGAGCA GGCGATGGCC
ATCGCACTCG GCGCGCTCAC CTTGCTCGGT CTCGGCATCT TCGGCCCCAG CATCGCGAAC
GGTATCGTCG CTGGCGGACC GCAGCTCGGA GCGGGCGCGG CAGCGGGAAC CACGGTCGCG
GCGGGCGCCA CCCTCGCCGC CGGTGCCGCC GGCGCGACGC TTGCGGGCGG CGCGGCGGCA
ACGGCAGCGC GGGGCGCGGC TGCTGCCGGC GCCCGCGGTG CGGGAAGCGC ATCGGCAGCC
TATTCCGCGG GAGCGGCCGG GAAGAGCGGG GCGAGGGCGG TCGGTTCCGG CCTGGCAAAT
GTCGCGCGCA GCGCCGCGAG CGGCGCCTCG TCCCCGCTCC GCCGCGCGGC GGAGAAGCTT
CGGGCGAACT TCGAGGCCGG GCGGGACGGG CCTGCCGATA GCGCGGCGCC GGCCCGGCCC
GCCGATGCGC CGCCCGCCTG GGCCGCAGCA ATGCGCCGCC GCCAGATGGT GACGCAGGGC
GCCACCATCG GTGCCCAGAC CCTGAAGGGT GGCGACAGCC ACGGCGGCGG TTCGGCTCCC
GACATCAGCG AAAAGGACTG A
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| Protein sequence | MNDTGVIDQF LSVFSTYIDS GFGLLGGEVG FLSSTLIVID VTIAALFWAW GADEDVLQRL
VKKTLYIGVF AFIIGNFQSL ATIMLESFAG LGLKASGGAM AIGDFMRPGV VAATGLDAAE
PLLDASADLL GPVGLFTNFV QIMILLVAWV IVVLAFFILA VQVFVTILEF KLVTLAGFVL
IPFAFFGRTA FMAERVLGHI ISSGIKVLVL AVITGIGTTL FDRFLEAGIG PEPDIEQAMA
IALGALTLLG LGIFGPSIAN GIVAGGPQLG AGAAAGTTVA AGATLAAGAA GATLAGGAAA
TAARGAAAAG ARGAGSASAA YSAGAAGKSG ARAVGSGLAN VARSAASGAS SPLRRAAEKL
RANFEAGRDG PADSAAPARP ADAPPAWAAA MRRRQMVTQG ATIGAQTLKG GDSHGGGSAP
DISEKD
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