| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2479 |
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| Symbol | |
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| ID | 4081317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2618021 |
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| End bp | 2618704 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010857 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_617519 |
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| Protein GI | 103487958 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.901597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.173698 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAGA GACCGACCAA CCATTATGGC CGCGCCCCCG AGCCGGTCAC CCCCTATCAG
CGCGCCGCGC AGGTCTGGGA CGACCGTATC GGCTCGGCGC GCGTCCAGGC GAAGAACTGG
CGGCTCGCCT TCTTCGGCTC GCTCCTCCTT TCGGGCGGTC TTGCGGGGGG CCTCATCTGG
CACTCGGCGC GCGGCACCAT CACCCCTTGG GTGGTCGAGG TCGACAAGCT CGGCGAGGCC
CGTGCAGTCG CGCCGGCGGA CGAGGATTAT CAGCCGACCG ATCCGCAGAC GGCGTTCCAT
CTCGCGCGGT TCATCGAGCA TGTGCGTTCG GTCCCGGCCG ACCCGGTGGT GCTGCGCAAG
GACTGGCTCC GCGCCTATGA TTTCACGACC GCGGCAGGGG CTCAGGCGCT CAACGATCAT
GCCCGCAACA ACGACCCCTT TTCCGAGGTC GGCAAGGTCC AGGTCGCGGT CGACGTCTCG
AGCGTGATCC GCGCCTCGAA GGACAGCTTC CGCATCGCCT GGACCGAGCG TCGCTATCAG
GACGGCAGCC TGATCGAGAC GTCGCGCTGG TCGGCCATTC TTACCGTCAC CCATGTGCCG
CCGCGCACTC CCGATGCCCT CCGCCGCAAT CCGCTTGGAG TGTTTGTTTC CGCTATTTCC
TGGTCGAAGG AGCTCAGCCA ATGA
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| Protein sequence | MFKRPTNHYG RAPEPVTPYQ RAAQVWDDRI GSARVQAKNW RLAFFGSLLL SGGLAGGLIW
HSARGTITPW VVEVDKLGEA RAVAPADEDY QPTDPQTAFH LARFIEHVRS VPADPVVLRK
DWLRAYDFTT AAGAQALNDH ARNNDPFSEV GKVQVAVDVS SVIRASKDSF RIAWTERRYQ
DGSLIETSRW SAILTVTHVP PRTPDALRRN PLGVFVSAIS WSKELSQ
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