| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2459 |
|---|
| Symbol | |
|---|
| ID | 4081336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2600851 |
|---|
| End bp | 2602395 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638010837 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_617499 |
|---|
| Protein GI | 103487938 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.536831 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCCG AAGACAATTC GGTAGCGTGG CGCGACGACG TCCGCGAAAT CGAGGCGCTA
TCGGAGCTCA TGCTTCGCGA GGCCAGCGGC TATGTCGTCG TCTTGCTCGA TCCCGCCGGC
ACCATCCGCG CGATCAATGG CGAGACCGAG AGGAAGGGAC TTTGGTCGAG CGCCGATCTG
TGCGGCCGCT CGCACGAGAT TTTCTATCCG CCCGATGAAA TGGCGAACGG CCGGCCTGAA
GCCGATCTGG CGGCGGCCCT CGCGCAGGGT TCCCTCGAGC GTGAGGCTTG GCGCGTGTGC
CGTGATGGAA CCGAATATCT CGCCAGGCTG ACGATCAATG CCCTGAAAGA TCAAGCGGGT
GTGATTCGCG GTTTCGGCAG CATCGTGCGC GACATCACCG AGGATGCGGC AATGCGCGGC
TCGATCGAAG CCCGCGAGCG ACATCTGCAG TCGATTCTCG CGACCGTTCC CGATGCCATG
ATCGTCATCG ACGAGCGGGG GCGCATAACC TCGTTCAGCG CTGCGGCCGA GCGATTGTTC
GGTTATGGCG AGAGCGAATT GCTTGGCCGC AATGTGTCCT GCCTCATGCC GCGGGCGGAC
AGTATCAGGC ATGACGAATA TATCGGCCAT TATCTCGAAA CGGGAGAGCG CCGAATCATC
GGGATCGGCC GCATCGTGGT CGGGCAGCGC CGGGACGGTT CGACTTTTCC AATGGAATTG
TCGGTCGGCG AGGCGGGGGG GCCGGAAGGG CGCATCTTCA CCGGCTTCAT TCGGGACCTG
ACGGAAAAGG AACATGATGA GCTGAGGCTC AAGGAATTGC AGGCCGAGCT TGTGCATGTC
TCGCGGCTGA GCGCGATGGG AACGATGGCC TCGACCTTGG CCCATGAGCT TAACCAGCCG
CTGACTGCCA TTGCCAACTA TCTGGAGACG ACGCGGGATC TTGTTGACGG GGAAGGGGAT
ATACCGCGGG ATATCCTGCA CGAAGCGCTG ACGGAGGCCG CCAATGAGAC CCTCAGGGCA
GGCTATATTG TTCGCCGCCT CAGGGATTTC GTAGCTCGGG GCGAGGTGGA AAAGACCGTA
GAGGATTTGC CGCGCCTGAT CGACGAGGCA GGCAAGCTGG CGCTTATCGG TGCCCGGGAA
CGCGGGGTCC GCAGCTTTTT CACCTTCGAC CCGGCCGCGA CACCTACGCT CGTGGACCGC
GTCCAGATCC AGCAGGTTCT GGTCAACATC ATGCGCAATG CCATTGAAGC GATGGCGGAC
TCCGAAGTGC GGGAACTGCG CGTTTCCACC AGGCTGCGGG CCGACGAGAT GATCGAGATT
GCGGTAGAGG ACAGCGGTCC CGGCATTGCG GAGGACGTGA TACCGCGGTT GTTCCAGGCT
TTTGTCAGCA GCAAATCGGA CGGCATGGGG CTCGGCCTGT CGATCTGTCG GACGATCGTT
GAGGCTCATG GCGGACGGAT CTGGGTCGAG GACGGTCCAG GCGGTGGAGC CGTGTTCCGA
TTCACCTTGG TTCACGCAAA GCTGGAGGAA GAACATGCAG GATAA
|
|---|
| Protein sequence | MIPEDNSVAW RDDVREIEAL SELMLREASG YVVVLLDPAG TIRAINGETE RKGLWSSADL
CGRSHEIFYP PDEMANGRPE ADLAAALAQG SLEREAWRVC RDGTEYLARL TINALKDQAG
VIRGFGSIVR DITEDAAMRG SIEARERHLQ SILATVPDAM IVIDERGRIT SFSAAAERLF
GYGESELLGR NVSCLMPRAD SIRHDEYIGH YLETGERRII GIGRIVVGQR RDGSTFPMEL
SVGEAGGPEG RIFTGFIRDL TEKEHDELRL KELQAELVHV SRLSAMGTMA STLAHELNQP
LTAIANYLET TRDLVDGEGD IPRDILHEAL TEAANETLRA GYIVRRLRDF VARGEVEKTV
EDLPRLIDEA GKLALIGARE RGVRSFFTFD PAATPTLVDR VQIQQVLVNI MRNAIEAMAD
SEVRELRVST RLRADEMIEI AVEDSGPGIA EDVIPRLFQA FVSSKSDGMG LGLSICRTIV
EAHGGRIWVE DGPGGGAVFR FTLVHAKLEE EHAG
|
|---|
| |