| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2448 |
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| Symbol | |
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| ID | 4081325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2585484 |
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| End bp | 2586632 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010826 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_617488 |
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| Protein GI | 103487927 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTATCA CTATCAACCG AAAGCTGCTG CTCGCCGCGA CGCTGCCGCT GTTCCTCGCC
GCCTGCGGTG GCGGCGAGAC CGCCAAACCC GCCGACGAGC ATGGCGAGGA AGAGGCCGGC
CATGCCGACG AGGGCAAGAT CACCCTCACC AACGAGCAGA TCAAGATCGC GGGGATCGCG
CTCGGCAGCC CGACCATCGG CAGCGCCGGC GCGCTGCAAT TGCCCGCAAC GATCGAAGGC
GATCCGCAAG GAACGCAGGC CGTGTCGGCC GCGATCGGCG GGCGGATCGT CGCGCTCAAC
CGCAATCTCG GACAGAGCGT CGGCCGTGGG CAGACGCTTG CGATTGTCGA GAGCCGCGAG
GCCGCGCAGC TCCAGGGCGA GGTGCAGGCC ACGCGTGCCC GATTAGCGCT TGCCAACTCC
AATCTCGCAC GCGAGGAGCG GCTGTTCGCA CAGCGCGTGT CGCCCGAGCA GGATGTGATT
GCGGCACGCA CGGCCGCGAC CGAAGCCAGG ATCGCCTATC AACTCGCGCA GCAGCAGGTA
TCCGCCGCAG GGGGCGGCGG CGGCCAGCTC AACCGGATTG CCATTACCGC GCCGATTTCG
GGCCAGGTAA TCGCGCGCAG CGTGGTGCTC GGTCAGACGG TTCCCGCCGA TGCAGAACTC
TATCGCATCG CCAACCTCTC GAGCGTTTCG CTCTCGCTGA ACCTCCAGCC CGCCGACGCC
GGTCGTATCC GGCCCGGCGC CGTCGTCTCG GTGAGCGCGC CTGGACGCCA GGCGACCGGC
AAGATCAGCT TCGTCTCGCC CGCGCTCGAT CCGGCCACGA AGCTCGTGCC CGCAATCGCG
ATCCTCGACA ATCGCGCCGG CCAATGGCGC GTCGGCGAAG CCGTGACCGC CTCGGTCGCG
CTGGCTGCGA GCGGCGGCGT CGGCTCGATC AGCGTTCCCG CGACCGCGAT CCAGACCGTC
GAGGGCAAGA GCGTCGTGTT CGTGCGTACC AAGGACGGGT TCGAGGCTGT CCCCGTGGTG
CTCGGCGACC GCGCGGGAGC CAATGTCATC GTCCGCTCCG GGCTCAAGGG CACCGAGCAG
ATCGCCATCA CCAACAGCTT TTCGCTCAAG GCCGAGATCG GCAAGGGCGA AGCAGGCGAT
GAGGACTAA
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| Protein sequence | MTITINRKLL LAATLPLFLA ACGGGETAKP ADEHGEEEAG HADEGKITLT NEQIKIAGIA
LGSPTIGSAG ALQLPATIEG DPQGTQAVSA AIGGRIVALN RNLGQSVGRG QTLAIVESRE
AAQLQGEVQA TRARLALANS NLAREERLFA QRVSPEQDVI AARTAATEAR IAYQLAQQQV
SAAGGGGGQL NRIAITAPIS GQVIARSVVL GQTVPADAEL YRIANLSSVS LSLNLQPADA
GRIRPGAVVS VSAPGRQATG KISFVSPALD PATKLVPAIA ILDNRAGQWR VGEAVTASVA
LAASGGVGSI SVPATAIQTV EGKSVVFVRT KDGFEAVPVV LGDRAGANVI VRSGLKGTEQ
IAITNSFSLK AEIGKGEAGD ED
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