Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2433 |
Symbol | |
ID | 4081139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 2571241 |
End bp | 2573355 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638010812 |
Product | TonB-dependent receptor |
Protein accession | YP_617474 |
Protein GI | 103487913 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.1738 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAT TATACTGTTA TTCGTCGACG AAGCGCGCAA TGCAGCGAAG CTCGATGGCG GCGATTGCGG TGGCGGTCGC GTTTCCCGCG CAGGCTCAGG AAGCCCAGTC GGACGGCCTC GCCGAGATCA TCGTAACGGC GGAGAAGCGC GAGGAAAATC TGCAGTCCGT TCCCGTCTCG GTGACAGCGA TGACCGGCGA GGCGCTTACG GCAACGGGCA TATCAAACGT CGAAGACCTC CAATTTTTTG TGCCGGGCGT GTCGATCACC AACGATTCCA TGGCGATCAT CAATATTCGT GGAATTGGCA CCTCGGCGTT CGGCGTTGCG ACCGACCCCA GCACGACAGT CCATTATGAC GGCGTCTACA TCTCGCGCCC GACCACAAAC TATCAGGATT TGTTCGACGT CGAACGCATC GAGGTGCTGC GCGGACCGCA AGGCGTTCTC TTCGGTCGCA ACTCCGCCGG CGGCACACTC AACATCATTT CCAAAATGCC TACGGAGGAT TTGACTGGCG CGCTGGGACT CACCGTCGGA AATTACGAGA AGCGCTCGCT GAGCGGCACG ATTTCTGGAC CGCTTGGAGC GGGCGTCCGA GGCCGCCTCA CCTTGCTTGC CAACCAGCGC GACGGCATCT ACCGCGACGT CGTCTCGGGA CGGCGATACC AAAACGAAGA TAATCTCGCT GGACGACTGA CGCTTGCGAT TGACGCGAGC GACCGTCTTG AGATCGTGTT GCGGGCGGAT GCCAGCCGTG ATCGCGAGAC CGGCGCGCGG TCTGTTCGGC CCTTTTATCC GCAAGGCTTC GTCGATGCGG GGGCGACGAT CCCGGCCAAT GACAAAGAGG CCGCACTCGA CCGCCTGCCG CGTTACGATG TCGATGCCTG GGGCGTGTCC TCGACCATGA ACTGGGACGG CGGCCCGGTC ACGCTCCGCT CGATTACGGC GCTGCGCAAG AGCAAGGTCG TCCAGGCGCT CGACGTTGAC TCGACTGACC TCTTCCTCCG CGATATCGAA TTTTACGAAC GTTCCCGCAG TTTCACGCAA GAGTTCCAAC TTCTCAACAA CGATGCGGAC AAGCTGCGCT GGATCGTCGG AGCATTCTAT CTGAATGAAA AGGGCAACGA CGAAATACGG ATCATCGAAC CGGGTCGTCG GCTCGCGATC CCGGAAAACA ATACGACGAA TGCATTCGCG CTCTTCGGAC AAGCAAGCTA CGAACTCATC GACCGCCTGC GATTGACCGG AGGGCTTCGA TACTCATACG AAAAAAAGGA TTTCGGATAT CGTGTCCTGC TGAACGGAAA TCAGGTCGAT GCCGGTCAGC CCAAATCATC CTGGACCGCC TGGACTCCGA AAATTGGGAT CGATTACGAC CTTGCCGATG ACGTCATGGC TTATGCGTCG GCAACCCGCG GGTTCAAATC GGGTGGATTC CAGCTGGGAG ACGGGCGGCC TTTCCTCCCG GAGTATGTCT GGAGCTACGA AGTCGGCTTG AAGTCGACGC TCCTCGATCG CCGGCTTCGA GCTAATTTTT CGGCCTTCTA TTATGATTAC ACCAATCTTC AGGTGGTCGA GTATAATAAT GGCGTTGCCA GTACCACCAA CGCCGGCAAG GCGACGATCA AGGGCGTTGA AGCGGAACTG ATGGCACGGC CGTTCGATCG CCTGACGCTT ACATCCACGA TCGCTTATCT CGATGCGCGC TACGATGTCT ATTTTGACGA CGTCGGCGCA AGCCTCAAGG GCAAGCGGCT GCCGAACGCG CCGAAGTGGA ACATCACTCT CGGCGGAGAA TATAAGGCCT CCCTGGGCGG CGGAATGCTG ACATTACGGA CCGATATCTC CTGGCGCGAC AGCATCTTTT TCAAGCCCAG CAACAATCCG CTTTTTTCCG GAAACGCCAC GACCCTTATA AATGGGCGTG TCGCATGGCA GCCGGCGAGC GAAGCGTGGG AAATTGCGCT TTATGGCCGA AATCTCACCA ACGAGCGCTA TGTGAGCTAT AGTACGATCG GGACGGACGC GACGGGTGTC TCGAACCCTA CTCTTCCGCT CTACATCTAC GGCGAGCCGC GCCAGTACGG ATTGCAGCTG CGCTACTTTT TCTGA
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Protein sequence | MNKLYCYSST KRAMQRSSMA AIAVAVAFPA QAQEAQSDGL AEIIVTAEKR EENLQSVPVS VTAMTGEALT ATGISNVEDL QFFVPGVSIT NDSMAIINIR GIGTSAFGVA TDPSTTVHYD GVYISRPTTN YQDLFDVERI EVLRGPQGVL FGRNSAGGTL NIISKMPTED LTGALGLTVG NYEKRSLSGT ISGPLGAGVR GRLTLLANQR DGIYRDVVSG RRYQNEDNLA GRLTLAIDAS DRLEIVLRAD ASRDRETGAR SVRPFYPQGF VDAGATIPAN DKEAALDRLP RYDVDAWGVS STMNWDGGPV TLRSITALRK SKVVQALDVD STDLFLRDIE FYERSRSFTQ EFQLLNNDAD KLRWIVGAFY LNEKGNDEIR IIEPGRRLAI PENNTTNAFA LFGQASYELI DRLRLTGGLR YSYEKKDFGY RVLLNGNQVD AGQPKSSWTA WTPKIGIDYD LADDVMAYAS ATRGFKSGGF QLGDGRPFLP EYVWSYEVGL KSTLLDRRLR ANFSAFYYDY TNLQVVEYNN GVASTTNAGK ATIKGVEAEL MARPFDRLTL TSTIAYLDAR YDVYFDDVGA SLKGKRLPNA PKWNITLGGE YKASLGGGML TLRTDISWRD SIFFKPSNNP LFSGNATTLI NGRVAWQPAS EAWEIALYGR NLTNERYVSY STIGTDATGV SNPTLPLYIY GEPRQYGLQL RYFF
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