Gene Sala_2427 details

Gene Information

• Locus tag: Sala_2427
• ID: 4081133
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sphingopyxis alaskensis RB2256
• Kingdom: Bacteria
• Replicon accession: NC_008048
• Strand: +
• Start bp: 2564091
• End bp: 2564780
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 638010806
• Product: AraC family transcriptional regulator
• Protein accession: YP_617468
• Protein GI: 103487907
• COG category: [K] Transcription
• COG ID: [COG2207] AraC-type DNA-binding domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCGGGA CCGGCTGGGC GCTCATTGAC GCGCGCATCG GGAGCAGCCG TCCCCATAAC 
CATGTGGCGC ACCAGATCAG CCTCGCCATC GAACGCGACC TCGAAATTTC CGGTGATGCC 
GACCTGATAG TTCCCGCCGG ACACGCCATT GCGATAGCGT CGCATGTCCG GCACCGCCTC 
GGGCCGCCGG GCGCCCTCGT GCGGTCATTT TATCTCGACC CGCTTTTTCG TGCCGACGCG 
CGGCTGTCCG CCGGATCGGC GCCCGTCCTG TTGACACCAG TAGAGACGGC CGGACTATGC 
GATATCGCTA GCGGCGCGGA CGCGAAGCGC TGGGCGTCCG ACTATCTCGA CCGGTCGCAG 
GTGCGTCCGG TGGATGCACG CCTGTCCGAG GCGCTCGCGG CCCCTAGTGA TTTGTCGACC 
GCGCGCGCGT TGGCCGACGT CGCCTGCCTC TCGCCCTCGC GCCTTCGCGA AATCGTCTGC 
CGCGACTTCG GCGTGCCTCC GGCCAAATTG CTGCAGTGGC TCCAGCTTCA ACGCGCCGTG 
CGGGCGCTGG TCGGCGGCGG AGGTCTCGCC GACGCAGCGG CGGCGGGAGG CTTCGCCGAT 
CAGTCGCACT TCACGCGCCG CTGCGCTCAA TGGCTAGGCG TGACGCCTTC GGCTGGCCTT 
AGCGCCTTCG CGTTCGAAAT CGTGCCCTGA 

 

Protein sequence

MLGTGWALID ARIGSSRPHN HVAHQISLAI ERDLEISGDA DLIVPAGHAI AIASHVRHRL 
GPPGALVRSF YLDPLFRADA RLSAGSAPVL LTPVETAGLC DIASGADAKR WASDYLDRSQ 
VRPVDARLSE ALAAPSDLST ARALADVACL SPSRLREIVC RDFGVPPAKL LQWLQLQRAV 
RALVGGGGLA DAAAAGGFAD QSHFTRRCAQ WLGVTPSAGL SAFAFEIVP