| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2422 |
|---|
| Symbol | |
|---|
| ID | 4080860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2559314 |
|---|
| End bp | 2561095 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638010801 |
|---|
| Product | copper-resistance protein CopA |
|---|
| Protein accession | YP_617463 |
|---|
| Protein GI | 103487902 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2132] Putative multicopper oxidases |
|---|
| TIGRFAM ID | [TIGR01480] copper-resistance protein, CopA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAT GGTTCCCGGC CTGGGCCCAG TCGGTGTCGT CCGGCATCAC CGCGCCGCTT
CCGACCGTAT CCGGCAATGA CATAACGCTG CGCATCGCCC GGCAGACGAT GCGGATCGAC
GGCAAGGTCA GCCGCGCGAT CGGGATCAAC GGCACCGTGC CCGCGCCGCT CGTCCGTCTA
AAGGAAGGGC AGACAGCGCG CCTGACCGTC GTCAACGATC TCGACGAGGA CAGCTCGATC
CACTGGCACG GGCTGATCCT GCCGTTCCAG ATGGACGGCG TGCCCGGCGT CAGCTTCCCC
GGCATCAAAC CGCGATCGCA GTTCGTGTAT GAGTTTCCCG TCGTCCAGTC GGGGACCTAT
TGGTATCACA GCCATTCGGG GCTGCAGGAA CAGCTGGGCC ACTACGGCCC GATCGTCATC
GATCCCGCGG GCGCCGACCC GATCGGCTAC GATCGCGAGC ATGTCGTCGT CCTGTCCGAC
CACAGTCAAT TGTCGCCCGA GGCGATCTTC CGCAAGCTCA AGGTCAATCC CGGCCATTTC
AACATGCAGC GCCAGACGCT GGCGGGCCTG CTCGCCGGCA AGGATCAACC GCTCAAGGAG
CGGATCGATT GGGGCAAGAT GCGGATGGAC CCGACCGACG TCGCCGACGT CAATGGTTCG
ACATACACCT TCCTCGTCAA CGGCCATGGT CCGCGCGACA ACTGGACCGC GCTCTTCAGC
CCGGGCGAGC GGGTGCGCCT GCGTATCGTC AATGCGTCGG CGATGACGAT CTTCAACGTC
CGCATCCCGG GCCTCAGGAT GACCGTGGTG CAGGCCGACG GCCTCAATGT CGTGCCGACC
GAGATCGACG AGTTCCAGAT CGCGGTCGCC GAAACCTATG ACGTCATCGT GACCCCGGTC
GAGGACCGTG CTTATACGCT CGTTGCCGAG GCCAATGACC GCTCGGGCAT GGGACGCGCG
ACGCTCGCAC CGCGCGCTGG CATGGTCGCC GAGGTGCCGC CGCTCCGCGA ACGGCCGCTC
GCGACCATGA AGGACATGGG CATGGGCGAC ATGTCGGGCG GCGCGATGGC GGGTATGGAC
CATTCGGGCG GCGATATGGG CGCCATGCCC ATGCCGGCGA GCGACCCTTC TTGTCCTCCC
GAACATGCCA AGATGGGCCA TTGTACGCCA GCGGGGGAAA GCGGCGCGAT GGCGGGCATG
GATCATGGAT CTGGCGGAGG CATGCAGCAC AGCATGCGCG ACTTCAGTGT CGCGCCGCAG
GTCAAGCGCG ATCCCAGCGT TCAGACGATC TCGCCGATGC CGATGGATCG CATGGGCGAG
CCGGGGCAGG GACTGGAGAA TGTCGGGCAC AAGGTGCTGA CCTACCATGA CCTTGTCGCG
CTCGAGCGCA ACCCCGATAC CCGCGCCGCC TCGCGCTCGC TCGACATCCA TCTGACCGGC
AATATGGAAC GCTTCATGTG GTCGTTCGAC GGCATCAAGA TGTCCGACTA TCACGAGCCC
ATCCCCTTCA TCGAGGGAGA GCGCGTGCGG ATCAACCTCA TCAACGATTC GATGATGAGC
CACCCCATCC ACCTCCACGG CCATTTTTTC GAACTGGTGA CGGGCAAGGG CGACCGGTCG
CCGCGCAAGC ATACGGTGCT TGTCCAGCCG GGCGGCATCG CGAGCTTCGA TTTCACCGCC
GACGCGCTCG GCGACTGGGC GTTCCATTGC CACCTTCTCT ATCACATGCA CGCGGGGATG
ATGCGCGTCG TCAGCGTCCG TCCGAAGGGA GACGGCGAAT GA
|
|---|
| Protein sequence | MAAWFPAWAQ SVSSGITAPL PTVSGNDITL RIARQTMRID GKVSRAIGIN GTVPAPLVRL
KEGQTARLTV VNDLDEDSSI HWHGLILPFQ MDGVPGVSFP GIKPRSQFVY EFPVVQSGTY
WYHSHSGLQE QLGHYGPIVI DPAGADPIGY DREHVVVLSD HSQLSPEAIF RKLKVNPGHF
NMQRQTLAGL LAGKDQPLKE RIDWGKMRMD PTDVADVNGS TYTFLVNGHG PRDNWTALFS
PGERVRLRIV NASAMTIFNV RIPGLRMTVV QADGLNVVPT EIDEFQIAVA ETYDVIVTPV
EDRAYTLVAE ANDRSGMGRA TLAPRAGMVA EVPPLRERPL ATMKDMGMGD MSGGAMAGMD
HSGGDMGAMP MPASDPSCPP EHAKMGHCTP AGESGAMAGM DHGSGGGMQH SMRDFSVAPQ
VKRDPSVQTI SPMPMDRMGE PGQGLENVGH KVLTYHDLVA LERNPDTRAA SRSLDIHLTG
NMERFMWSFD GIKMSDYHEP IPFIEGERVR INLINDSMMS HPIHLHGHFF ELVTGKGDRS
PRKHTVLVQP GGIASFDFTA DALGDWAFHC HLLYHMHAGM MRVVSVRPKG DGE
|
|---|
| |