Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2401 |
Symbol | |
ID | 4080553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2537090 |
End bp | 2537818 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638010780 |
Product | phage integrase |
Protein accession | YP_617442 |
Protein GI | 103487881 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.340015 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0277032 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACGG GCGGGCCCGG CGTGGCGGGC CGCTGCCTCG GCACGCTTCA GGCGATCATC GGTCACGCGA AGCACAAGGG TCTGCTCGAA GTACACCCGA CCCTCGGGGC CAAGAAGCTC GCGAGCAAAA AGAAGACGCG GCGCCTCAGC GTCGCTGAAA TCGAGATGAT GGGGAAGGCC ATCGCTCATG CCGAGGCGAG CGGCGAGAAT CCGGTCGCTC TCGGCGTCCT GCGCACCTTG CTGCTGACGG GCTATCGCCG GGAAGAAGGG CAAGCGATGC GCCGCAGCTG GCTTCATCCC GATGCCGGCT ATGTTGCTTT TCCCGACACG AAGGGCGGCG CACAGATTCG AGCGATCGGT CCGGCCGCGG TGCGGGTTCT GCAAGACCAG GCAGAGATTG CGGGCAATCC GCACCTGTTT CCCTCGACCA TCGGCGACGG TCCCTTCACG GCGGTTAGCG AGTGCCTCCG GCGCGTGTGC GTTTTGGCAG GTATAGAGGG TGTGACGCCC CATACGCTTC GCCACACCTT CGGAAGCGTC GCGGGAGATT TGGGATTCTC GGAACTCACG ATCCGCGCAA TGCTCGGACA TGCTTCGCAG AATGTGACCC AGGATTATGT CCACATCGAT GAAGCGCTGA AACTCGCTGT CCGGCGGACC TCGGACGAAA TCGAGCGGCT GCTGGCGAGC GGCGCGGCCA AGCTCGGGAC CATGCGACAC GCCGCTTGA
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Protein sequence | MATGGPGVAG RCLGTLQAII GHAKHKGLLE VHPTLGAKKL ASKKKTRRLS VAEIEMMGKA IAHAEASGEN PVALGVLRTL LLTGYRREEG QAMRRSWLHP DAGYVAFPDT KGGAQIRAIG PAAVRVLQDQ AEIAGNPHLF PSTIGDGPFT AVSECLRRVC VLAGIEGVTP HTLRHTFGSV AGDLGFSELT IRAMLGHASQ NVTQDYVHID EALKLAVRRT SDEIERLLAS GAAKLGTMRH AA
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